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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCCTGGTAAACCAGTTATGGAGATTGGAAGTGCTGACTTCCCTAATTCTCGCTCTGCTATGAGTTCACCTTTAGCTAAAGCCATTTTCGCCATTGATGgtattcctcgtcttttgctacaacatacaattgtttcctcctcatataatccgtgttttgtgactaagattgtctctgttgatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G51390.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G51390.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv13s0106g00620.t01 (Vitis vinifera), 5'ss of exon 2
AGTCCTGGTAAACCAGTTATGGAGATTGGAAGTGCTGACTTCCCTAATTCTCGCTCTGCTATGAGTTCACCTTTAGCTAAAGCCATTTTCGCCATTGATGgtattcctcgtcttttgctacaacatacaattgtttcctcctcatataatccgtgttttg--tgactaagattgtctctgtt-gatgcag-----------
  |||||| || |||||||||||| | || ||||| ||||| || |||||||| || ||||||||||| ||  |||| |||    |||  |  ||||||||||    ||||| |||  |    | ||    ||| |     |  |    |   | | |||    | |    || |   | ||  || |             
TATCCTGGAAAGCCAGTTATGGAGGTAGGGAGTGCAGACTTTCCGAATTCTCGTTCAGCTATGAGTTCTCCACTAGCAAAAAGTCTTTATGGAATTGATGgtaagt-tcgtccttttttgatgcttatgcgtgtgtttatatatttgggttaatatgttggccaatttgttttatgagtatttaatacgaataaccttagc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072555|gb|DR368312.1|DR368312
EST:     TCGTTCTGCTATGAGTTCACCTTTAGCTAAAGCCATTTTCGCCATTGATG                         GTGTAGTTCGAGTTTTCTATGGGTCAGATTTTGTTACTGTAACAAAGTCAG
genomic: TCGCTCTGCTATGAGTTCACCTTTAGCTAAAGCCATTTTCGCCATTGATGgtattcctcg ... gttgatgcagGTGTAGTTCGAGTTTTCTATGGGTCAGATTTTGTTACTGTAACAAAGTCAG