1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGTTGTTGTTGGAGGGATTACTCCTACTCCTCTTGGAGAAGGCAAGAGTACTACCACTGTTGGACTTTGCCAAGCCTTAGGCGCTTACCTCGATAAGAAGgttctctcttgctttcatttattagcttatgccttatgcttgcttttggacaaacttctctctttgtattgatttgtgaagtgttgttgcttag
species | Arabidopsis thaliana |
transcript | AT1G50480.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTACCACTGTTGGACTTTGCCAAGCCTTAGGCGCTTACCTCGATAAGAAG GTTGTTACTTGTCTTCGCCAACCGTCACAAGGACCCACCTTTGGAATCAAAEST: gi|125301106|gb|EL315191.1|EL315191
genomic: CTACCACTGTTGGACTTTGCCAAGCCTTAGGCGCTTACCTCGATAAGAAGgttctctctt ... tgttgcttagGTTGTTACTTGTCTTCGCCAACCGTCACAAGGACCCACCTTTGGAATCAAA
EST: CTACCACTGTTGGACTTTGCCAAGCCTTAGGCGCTTACCTCGATAAGAAG GTTGTTACTTGTCTTCGCCAACCGTCACAAGGACCCACCTTTGGAATCAAA
genomic: CTACCACTGTTGGACTTTGCCAAGCCTTAGGCGCTTACCTCGATAAGAAGgttctctctt ... tgttgcttagGTTGTTACTTGTCTTCGCCAACCGTCACAAGGACCCACCTTTGGAATCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGTTGTTGGAGGGATTACTCCTACTCCTCTTGGAGAAGGCAAGAGTACTACCACTGTTGGACTTTGCCAAGCCTTAGGCGCTTACCTCGATAAGAAGgttctctcttgctttcatttattagcttatgccttatgcttgcttttggacaaacttctctctttgtattgatttgtgaagtgttgttgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG