1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCTGGTGATAACTTGGTTCATTATGTCGTTGATCATCCATCCGCTGTTTGGTTTGTTGGTCCCCTATTCGCATCTCTCACAGGACTCGTTTTCAAAGAAGgtaaatatcttgcttctgcataaggcttcatatctttaaccgtgccaatgttcttgatatgtaatttctgtctgcag
species | Arabidopsis thaliana |
transcript | AT1G28140.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGCATCTCTCACAGGACTCG-TTTCAAAGAAG GTCTTTGTTATGGAAAGCTAGAAGCTGGCCTTCTTACATTCATCATACCTTEST: gi|86075347|gb|DR371104.1|DR371104
genomic: CGCATCTCTCACAGGACTCGTTTTCAAAGAAGgtaaatatct ... ctgtctgcagGTCTTTGTTATGGAAAGCTAGAAGCTGGCCTTCTTACATTCATCATACCTT
EST: GTTTGTTGGTCCCCTATTCGCATCTCTCACAGGACTCGTTTTCAAAGAAG GTCTTTGTTATGGAAAGCTAGAAGCTGGCCTTCTTACATTCATCATACCTT
genomic: GTTTGTTGGTCCCCTATTCGCATCTCTCACAGGACTCGTTTTCAAAGAAGgtaaatatct ... ctgtctgcagGTCTTTGTTATGGAAAGCTAGAAGCTGGCCTTCTTACATTCATCATACCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGTGATAACTTGGTTCATTATGTCGTTGATCATCCATCCGCTGTTTGGTTTGTTGGTCCCCTATTCGCATCTCTCACAGGACTCGTTTTCAAAGAAGgtaaatatcttgcttctgcataaggcttcatatctttaaccgtgccaatgttcttgatatgtaatttctgtctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG