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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCGGGGATTCAGAACCAGACCTTGCTGTTAGGGATAATGCAGCAGGTGCTACCGCAAGGATGATTGTTGTTCATCCTCAACTAGTCCCGCTAAATCAAgtatgatctaggagctaggccattttcatgtatttttgcttacttcctgaaaccttatgaaacacggtactcatccctaagttatataatccag

Basic information

species Arabidopsis thaliana
transcript AT4G27640.1
intron # 18
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164113386|gb|ES052844.1|ES052844
EST:     GTCCCGCTAAATCAA                         GTACTTCCAGTGTTCTTAAGAGGTCTACCTCTAAAGGAAGATCAAGAGGAG
genomic: GTCCCGCTAAATCAAgtatgatcta ... tataatccagGTACTTCCAGTGTTCTTAAGAGGTCTACCTCTAAAGGAAGATCAAGAGGAG
EST: gi|125017191|gb|EL089460.1|EL089460
EST:     CATCCTCAACTAGTCCCGCTAAATCAA                         GTACTTCCAGTGTTCTTAAGAGGTCTACCTCTAAAGGAAGATCAAGAGGAG
genomic: CATCCTCAACTAGTCCCGCTAAATCAAgtatgatcta ... tataatccagGTACTTCCAGTGTTCTTAAGAGGTCTACCTCTAAAGGAAGATCAAGAGGAG
EST: gi|125268728|gb|EL282813.1|EL282813
EST:     TCCTCAACTAGTCCCGCTAAATCAA                         GTACTTCCAGTGTTCTTAAGAGGTCTACCTCTAAAGGAAGATCAAGAGGAG
genomic: TCCTCAACTAGTCCCGCTAAATCAAgtatgatcta ... tataatccagGTACTTCCAGTGTTCTTAAGAGGTCTACCTCTAAAGGAAGATCAAGAGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCGGGGATTCAGAACCAGACCTTGCTGTTAGGGATAATGCAGCAGGTGCTACCGCAAGGATGATTGTTGTTCATCCTCAACTAGTCCCGCTAAATCAAgtatgatctaggagctaggccattttcatgtatttttgcttacttcctgaaaccttatgaaacacggtactcatccctaagttatataatccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG