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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGCAGTTTCTGACCTCCTTCCCGCCTTTGCAAAGTGTATGGGTTCTCAATTTGAACCTGTCTTTGCCCAATTCTTTGAGCCGTTGATGAAATTTGCGgtgggtattagtgaataaagtattcattgacatatcttcttccattgaaacttaggcacttactgtttcacttcttgtgtctgtag

Basic information

species Arabidopsis thaliana
transcript AT4G27640.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G27640.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv12s0034g02160.t01 (Vitis vinifera), 5'ss of exon 15
GGATGCAGTTTCTGACCTCCTTCCCGCCTTTGCAAAGTGTATGGGTTCTCAATTTGAACCTGTCTTTGCCCAATTCTTTGAGCCGTTGATGAAATTTGCGgtgggtattagtgaataaagtat--tcattgacatatcttcttccattgaaacttaggcact-tactgtt----tcacttcttgtgtctgtag---------
|||||||||||||||||| ||||| || ||||||||||  |||||| |||| ||||  |||   |||||   | | ||| | ||  | ||||||||||||||| ||   |   | |    | |  |  |||| || ||        |||  | ||      | || |||     |||||  ||   |   | |         
GGATGCAGTTTCTGACCTTCTTCCAGCATTTGCAAAGTCCATGGGTCCTCATTTTGCCCCTACTTTTGCAACACTATTTAACCCTCTAATGAAATTTGCGgtgagttgcaactagttgcctctgatatttgaaatctcaatcctttttgtcatttcatggttgtagtgtgcttgtcactcatttaattattggagagtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125031879|gb|EL104148.1|EL104148
EST:     GTTGATGAAATTTGCG                         AAAGCTTCACGTCCTCCACAGGATAGGACAATGGTAGTTGCTAGTCTTG
genomic: GTTGATGAAATTTGCGgtgggtatta ... gtgtctgtagAAAGCTTCACGTCCTCCACAGGATAGGACAATGGTAGTTGCTAGTCTTG
EST: gi|125053649|gb|EL124658.1|EL124658
EST:     ATTTGAACCTGTCTTTGCCCAATTCTTTGAGCCGTTGATGAAATTTGCG                         AAAGCTTCACGTCCTCCACAGGATAGGACAATGGTAGTTGCTAGTCTTG
genomic: ATTTGAACCTGTCTTTGCCCAATTCTTTGAGCCGTTGATGAAATTTGCGgtgggtatta ... gtgtctgtagAAAGCTTCACGTCCTCCACAGGATAGGACAATGGTAGTTGCTAGTCTTG