Sequence
atgc intronic sequence ATGC exonic sequenceTCTGGAGATCGCAACTCCCATTCTCATCCCCAGAGATGATGGACACAAACACCGCAAAGGCAGTCACGGAGATGTAATCTTCTTGACAAACCGTGGAGAGgtacttttttcctttctatatatgccgatacaatctcttaatttcttcaactttgaatttcgtttaataatagctcatcactgctccgtatcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G51050.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G51050.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA01G37580.1 (Glycine max), 5'ss of exon 12
TCTGGAGATCGCAACTCCCATTCTCATCCCCAGAGATGATGGACACAAACACCGCAAAGGCAGTCACGGAGATGTAATCTTCTTGACAAACCGTGGAGAGgtacttttttccttt-ctatatatgccgatacaatctcttaatttcttca---actttgaatttcgttta---ataatagctcatc--actgctccgtatcag
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TTTAGAGGTAGCAACACCTATTCTAATTCCTAGAAGTGACGGTCATAGGCATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACAAATCGTGGAGAGgtatgccattgtttgacttcttagggttataatatttgttaaattgtttgttgagcaccaatactgtttctccatttttgtttatctaagtgtttcctgt---
upper sequence: AT3G51050.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA11G07720.1 (Glycine max), 5'ss of exon 12
TCTGGAGATCGCAACTCCCATTCTCATCCCCAGAGATGATGGACACAAACACCGCAAAGGCAGTCACGGAGATGTAATCTTCTTGACAAACCGTGGAGAGgtacttttttcctttctatatatgccgatacaatctcttaatttcttcaactttgaatttcgt-ttaataatagctcatcactgctccgtatcag--------
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TTTAGAGGTAGCAACACCTATTCTAATTCCTAGAAGTGATGGTCATAGGCATCGGAAGGGAAGCCATGGTGATGTTATCTTCTTGACAAATCGTGGAGAGgtatgccagccattgtttgacttcttaaggttataac---attttttaaattgtttgttgagcactaatgctgtttcttcattattttttatcaaagtgttccMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164216234|gb|ES062987.1|ES062987EST: CCGCAAAGGCAGTCACGGAGATGTAAATCTTCTTGACAAACCGTGGAGAG GTGACATCATAC
genomic: CCGCAAAGGCAGTCACGGAGATGTAA-TCTTCTTGACAAACCGTGGAGAGgtactttttt ... tccgtatcagGTGACATCATAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTGGAGATCGCAACTCCCATTCTCATCCCCAGAGATGATGGACACAAACACCGCAAAGGCAGTCACGGAGATGTAATCTTCTTGACAAACCGTGGAGAGgtacttttttcctttctatatatgccgatacaatctcttaatttcttcaactttgaatttcgtttaataatagctcatcactgctccgtatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA