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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCTGGGCAGGAATGTATACAGTTCGATATTTTGATGGAAAAACATATGAGTGGGTTGGCATTAGCCGCCAGCCTAACATTATTGGCAAAgtaggtttgttcaaccttgagagtgcatacacatggtcctagccgttgtacatccaatgagaattttgtatattttttcag

Basic information

species Arabidopsis thaliana
transcript AT1G15110.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15110.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 10
GTATCTGGGCAGGAATGTATACAGTTCGATATTTTGATGGAAAAACATATGAGTGGGTTGGCATTAGCCGCCAGCCTAACATTATTGGCAAAgtaggtttgttcaaccttgagagtgcatacacatggtcctagccgttgtacatccaatgagaattt-tgtatattttttcag-------------------
| || |||||||||||| |||| ||| |||||||||| || ||||||||  | ||||||||  | ||||  ||||||||||| || || |||||| |||| |   |  ||||  ||   |       ||  |  || || | | |  |      |||  | |  |  ||   ||                   
GAATATGGGCAGGAATGCATACTGTTAGATATTTTGACGGGAAAACATACAAATGGGTTGGTCTAAGCCAGCAGCCTAACATAATAGGAAAAgtatgtttttaagattttgattgtttttgtcatcagttatt-ccattatgcttgaatccttgattcctattgaagttgatagctctctaacttgaaatcta

upper sequence: AT1G15110.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 10
GTATCTGGGCAGGAATGTATACAGTTCGATATTTTGATGGAAAAACATATGAGTGGGTTGGCATTAGCCGCCAGCCTAACATTATTGGCAAAgtaggtttgttcaaccttgagagtgcatacacatggtcctagccgttgtacatccaatgagaattttgtatattttttcag-----------------------
|||| ||||| |||||| |||| ||| ||||||||||||||| |||||| ||||||||||| || ||||| ||||| || ||||||||||||||| ||| || || |    ||  |  |  |     ||  |||   |  | || | ||  |  ||  |||  | |||||                          
GTATTTGGGCTGGAATGCATACTGTTAGATATTTTGATGGAAGAACATACGAGTGGGTTGGTATAAGCCGGCAGCCCAATATTATTGGCAAAgtatgtt-gtgcatc--aaagtatttactctttcagttttagtaatatttcaactaa-aattatcatgtgcaattttttttcttctttccattttttaatgtgg