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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTCATTGATTGGTGATGGTTGTGAGTGTGATGGCTACAGCATTCGCATTGTTGGGCATTCTTTAGGAGGTGCTATCGCCTCATTACTGGGAATTAGAgtacgtttttaattaataaaaggttacatgcctttctttaacatatctttcgtttctgagttcttttctttttgcgggtag

Basic information

species Arabidopsis thaliana
transcript AT1G05790.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G05790.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G176542_T02 (Zea mays), 5'ss of exon 10
GTCCTCATTGATTGGTGATGGTTGTGAGTGTGATGGCTACAGCATTCGCATTGTTGGGCATTCTTTAGGAGGTGCTATCGCCTCATTACTGGGAATTAGAgtacgtttttaattaataaaaggttacatgcctttctttaacatatctttcgtttctgagttcttttctttttgcgggtag-------------------
 || ||  |  |||| ||||||||||||||  |||| ||||  ||||  |||||||| ||||||||||||||| || | ||  || | || || ||||  ||| |||| |  ||   ||             | |||| |         |    | |||  | |||  || |  |   |||                   
ATCTTCTCTTCTTGGGGATGGTTGTGAGTGCCATGGATACAATATTCAAATTGTTGGACATTCTTTAGGAGGTTCTGTAGCTGCACTTCTTGGTATTAAGgtaagtttatttttttcaatgtacagggaaattgtcttaagtcacctgatgaggtttgacgtatttagttataacatttagtgtgtccttttatgtgttt