1 5' 3' |
TTTCAGCAGCAAGATGGTGAACAACGTTGTCTCTATCGAAAAGATGAAAGCACTCTGGCACTCCGAGGTTCATGATGAACAAAAATGGGCGGTGAACATGgtaaccttcatacattctctctttcgtttaattccgacttgattgtctattgaatatcgaagtctcgattctcttgtatgtttcatgattagattctggg...
species | Arabidopsis thaliana |
transcript | AT5G08040.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CACTCTGGCACTCCGAGGTTCATGATGAACAAAAATGGGCGGTGAACATG AAACTTCTGCGAGCACTEST: gi|86078856|gb|DR374613.1|DR374613
genomic: CACTCTGGCACTCCGAGGTTCATGATGAACAAAAATGGGCGGTGAACATGgtaaccttca ... ttggttgcagAAACTTCTGCGAGCACT
EST: CACTCTGGCACTCCGAGGTTCATGATGAACAAAAATGGGCGGTGAACATG AAACTTCTGCGAGCACTTGGTATGTTTGCAGGAGGAGTCGTCCTCATGCGTEST: gi|164117061|gb|ES058858.1|ES058858
genomic: CACTCTGGCACTCCGAGGTTCATGATGAACAAAAATGGGCGGTGAACATGgtaaccttca ... ttggttgcagAAACTTCTGCGAGCACTTGGTATGTTTGCAGGAGGAGTCGTCCTCATGCGT
EST: CACTCTGGCACTCCGAGGTTCATGATGAACAAAAATGGGCGGTGAACATG AAACTTCTGCGAGCACTTGGTATG
genomic: CACTCTGGCACTCCGAGGTTCATGATGAACAAAAATGGGCGGTGAACATGgtaaccttca ... ttggttgcagAAACTTCTGCGAGCACTTGGTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCAGCAGCAAGATGGTGAACAACGTTGTCTCTATCGAAAAGATGAAAGCACTCTGGCACTCCGAGGTTCATGATGAACAAAAATGGGCGGTGAACATGgtaaccttcatacattctctctttcgtttaattccgacttgattgtctattgaatatcgaagtctcgattctcttgtatgtttcatgattagattctggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctttcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcgattc