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gtaagcgaaacacggctcaatgttttattcttttgctcttccactgaacccggtactctgttttggaacaacatatgtttggaccacctacaccaattgttcttaaagctttgtttctttgctttaccaaactacagagcgtagttgcttaagtctgccttttacagATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAGTTCACTGCCGAAAG
species | Zea mays |
transcript | GRMZM5G840582_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACTGAGTCCGAATGTTCCCGGGCAAATCTTT ATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAGEST: gi|78112475|gb|DV530869.1|DV530869
genomic: ACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaa ... ccttttacagATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG
EST: ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTT ATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAGEST: gi|32850940|gb|CD990621.1|CD990621
genomic: ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaa ... ccttttacagATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG
EST: ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTT ATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAGEST: gi|32807630|gb|CD959864.1|CD959864
genomic: ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaa ... ccttttacagATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG
EST: ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTT ATGGGAGTGATGGTTAEST: gi|91054117|gb|EB164535.1|EB164535
genomic: ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaa ... ccttttacagATGGGAGTGATGGTTA
EST: ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTT ATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAGEST: gi|7216933|gb|AW563070.1|AW563070
genomic: ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaa ... ccttttacagATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG
EST: ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTT ATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACEST: gi|32845230|gb|CD984911.1|CD984911
genomic: ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaa ... ccttttacagATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATAC
EST: TACTGAGTCCGAATGTTCCCGGGCAAATCTTT ATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAGEST: gi|7227753|gb|AW566394.1|AW566394
genomic: TACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaa ... ccttttacagATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG
EST: ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTT ATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG
genomic: ACAAGGTTGCATCAATAGTACTGAGTCCGAATGTTCCCGGGCAAATCTTTgtaagcgaaa ... ccttttacagATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAG
gtttctttgctttaccaaactacagagcgtagttgcttaagtctgccttttacagATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAGTTCACTGCCGAAAG
tctgcctttt CT-rich tract
ttttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgaaacacggctcaatgttttattcttttgctcttccactgaacccggtactctgttttggaacaacatatgtttggaccacctacaccaattgttcttaaagctttgtttctttgctttaccaaactacagagcgtagttgcttaagtctgccttttacagATGGGAGTGATGGTTAACCCTCCTAAACCTGGAGATATCTCATACCCGAAGTTCACTGCCGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT