1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttatgataatatcaagcgcccgcaccccagcaaggctgactgccgccgtcgagcagtatctcatggaacacggccttctgtacacgcagGTGCAACCAGGCCTGCTCCGCATCCTGCTCTAGTAATGGAACTGGTCGTCCTAGCTGTTGTTCACAACTGGATCAGATGAAAAAGAAGGGAAAAA
species | Zea mays |
transcript | GRMZM5G830874_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGCTCAACAACCGAAGAAAGATCGTGAGATCAACCGGTCGCCGACTCCAG GTGCAACCAGGCCTGCTCCGCATCCTGCTCTAGTAATGGAACTGGTCGTCCEST: gi|211376348|gb|FL146641.1|FL146641
genomic: AGCTCAACAACCGAAGAAAGATCGTGAGATCAACCGGTCGCCGACTCCAGgttatgataa ... gtacacgcagGTGCAACCAGGCCTGCTCCGCATCCTGCTCTAGTAATGGAACTGGTCGTCC
EST: AGCTCAACAACCGAAGAAAGATCGTGAGATCAACCGGTCGCCGACTCCAG GTGCAACCAGGCCTGCTCCGCATCCTGCTCTAEST: gi|161581932|gb|EY952192.1|EY952192
genomic: AGCTCAACAACCGAAGAAAGATCGTGAGATCAACCGGTCGCCGACTCCAGgttatgataa ... gtacacgcagGTGCAACCAGGCCTGCTCCGCATCCTGCTCTA
EST: CGGTCGCCGACTCCAG GTGCAACCAGGCCTGCTCCGCATCCTGCTCTAGTAATGGAACTGGTCGTCCEST: gi|94474874|gb|EB703832.1|EB703832
genomic: CGGTCGCCGACTCCAGgttatgataa ... gtacacgcagGTGCAACCAGGCCTGCTCCGCATCCTGCTCTAGTAATGGAACTGGTCGTCC
EST: AGCTCAACAACCGAAGAAAGATCGTGAGATCAACCGGTCGCCGACTCCAG GTGCAACCAGGCCTGCTCCGCATCCTGCTCTAGTAATGGAACTGGTCGTCCEST: gi|211291209|gb|FL443498.1|FL443498
genomic: AGCTCAACAACCGAAGAAAGATCGTGAGATCAACCGGTCGCCGACTCCAGgttatgataa ... gtacacgcagGTGCAACCAGGCCTGCTCCGCATCCTGCTCTAGTAATGGAACTGGTCGTCC
EST: AGCTCAACAACCGAAGAAAGATCGTGAGATCAACCGGTCGCCGACTCCAG GTGCAACCAGGCCTS-TCCGCATCCTGCTCTAGTAATGGAACTGGTCGTCC
genomic: AGCTCAACAACCGAAGAAAGATCGTGAGATCAACCGGTCGCCGACTCCAGgttatgataa ... gtacacgcagGTGCAACCAGGCCTGCTCCGCATCCTGCTCTAGTAATGGAACTGGTCGTCC
gctgactgccgccgtcgagcagtatctcatggaacacggccttctgtacacgcagGTGCAACCAGGCCTGCTCCGCATCCTGCTCTAGTAATGGAACTGGTCGTCCTAGCTGTTGTTCACAACTGGATCAGATGAAAAAGAAGGGAAAAA
ggctgac putative branch site (score: 63)
ccttctgt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatgataatatcaagcgcccgcaccccagcaaggctgactgccgccgtcgagcagtatctcatggaacacggccttctgtacacgcagGTGCAACCAGGCCTGCTCCGCATCCTGCTCTAGTAATGGAACTGGTCGTCCTAGCTGTTGTTCACAACTGGATCAGATGAAAAAGAAGGGAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG