Sequence
atgc intronic sequence ATGC exonic sequence...tactaggacagtaggacttgggacctgctatgttgacataggtggagtttgtcaagatatgattacctcggattaatttgattaaactattcctcttcagGTATTCTGCAGTTACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G130034_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os12g40550.1 (Oryza sativa), 3'ss of exon 8
tactaggacagtaggacttgggacctgctatgttgacataggtggagtttgtcaa-gatatgattacctcgg-attaatttg----attaaactattcctcttcagGTATTCTGCAGTTACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG
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------atttatgaagctagtaggtggtcaagcagaatttcaagaaaatggtcaaagatatatttgcagcgataatgtttttccataatgaattattcttcttcagGTATTCTGCAGCTACATCCAGGAGCAATCAATAGCATCCCAAGTAAATCGCATGTGGAAATTG
upper sequence: GRMZM2G130034_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA10G32850.2 (Glycine max), 3'ss of exon 7
tactaggacagtaggacttgggacctgctatgttgacataggtggagtttgtcaagatatgattacctcggattaatttgattaaactattcctcttca-gGTATTCTGCAGTTACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG
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---------------------------gtaggttattattgaagtgcctcgattaatctaga--acttccatttaagctaacct--cttttattttacaagGTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTCACCTAGAAATTG
upper sequence: GRMZM2G130034_T01 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA20G34790.1 (Glycine max), 3'ss of exon 8
tactaggacagtaggacttgggacctgctatgttgacataggtggagtttgtcaagatatg-attacctcggattaatttgattaaactattcctcttca-gGTATTCTGCAGTTACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG
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---------------------------gtaagttattat---tgaagtgtctcgattaatctagaactttcgtttaaactaacct--cttttattttacaagGTATCCTGGAACTGCATCCTGGAGCAATCAACAGCATCCCCAGCAAATCTCACCTAGAAATTG
upper sequence: GRMZM2G130034_T01 (Zea mays), 3'ss of exon 8
lower sequence: AT5G43600.1 (Arabidopsis thaliana), 3'ss of exon 8
tactaggacagtaggacttgggacctgctatgttgacataggtggagtttgtcaagatatgattacctcggattaatttgattaaactattcctcttcagGTATTCTGCAGTTACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG
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-----------------gtaagttttgcctcactaatttctaaagaacttac-----tctcaatagaacgtattcacagaatgaatcattgtggtttaagGTATTCTGGAGCTACATCCTGGGGCAATCAACAGCATTCCAAGCAAATCCCATCTTGAAATCG
upper sequence: GRMZM2G130034_T01 (Zea mays), 3'ss of exon 8
lower sequence: Vv05s0020g04900.t01 (Vitis vinifera), 3'ss of exon 8
tactaggacagtaggacttgggacctgctatgttgacataggtggagtttgtcaagatatgattacctcggattaatttgattaaactattcctcttcagGTATTCTGCAGTTACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG
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tataggctgtatctagtaaaacaattaatgctttaccttttatttgttaccttcattcttccaaagctcagagtcaagtgataaatccctgtctccccagGTATTCTGGAGCTGCATCCTGGAGCAATCAACAGCATTCCAAGCAAATCACATCTAGAAATTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtttgtcaagatatgattacctcggattaatttgattaaactattcctcttcagGTATTCTGCAGTTACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG
ctattcctcttc CT-rich tract
attaatttgattaaac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tactaggacagtaggacttgggacctgctatgttgacataggtggagtttgtcaagatatgattacctcggattaatttgattaaactattcctcttcagGTATTCTGCAGTTACATCCAGGAGCAATCAATAGCATCCCAAGCAAATCACACCTAGAAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA