1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgatattaaagacgctagtgctactgctggttcatctattgttcttgcctttttaccattcattttgaactttttgttgattatattttgcagGTTACACCGTTGGAACAACTAGATAGGAAGCATTTTGCCAAAGTTCCACATACTAAAGATGGCTCAAACACAGCTCCTAATGGTAATGCTTTCAAGGAGG
species | Zea mays |
transcript | GRMZM2G178227_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGAGTGGCGGTACTGTTCAACAGCGTGCAGATCGTCTTTTCTTGTTGAAG GTTACACCGTTGGAACAACTAGATAGGAAGCATTTTGCCAAAGTTCCACATEST: gi|60393978|gb|DN226848.1|DN226848
genomic: AGAGTGGCGGTACTGTTCAACAGCGTGCAGATCGTCTTTTCTTGTTGAAGgtgatattaa ... tattttgcagGTTACACCGTTGGAACAACTAGATAGGAAGCATTTTGCCAAAGTTCCACAT
EST: AGAGTGGCGGTACTGTTCAACAGCGTGCAGATCGTCTTTTCTTGTTGAAG GTTACACCGTTGGAACAEST: gi|76290494|gb|DV030062.1|DV030062
genomic: AGAGTGGCGGTACTGTTCAACAGCGTGCAGATCGTCTTTTCTTGTTGAAGgtgatattaa ... tattttgcagGTTACACCGTTGGAACA
EST: GAGTGGCGGTACTGTTCAACAGCGTGCAGATCGTCTTTTCTTGTTGAAAG GT-ACACCGTTGGAACAACTAGATAGGAAGCATTTTGC-AAAGTTCCACAEST: gi|33094832|gb|CF054826.1|CF054826
genomic: GAGTGGCGGTACTGTTCAACAGCGTGCAGATCGTCTTTTCTTGTTGAA-Ggtgatattaa ... tattttgcagGTTACACCGTTGGAACAACTAGATAGGAAGCATTTTGCCAAAGTTCCACA
EST: ACTGTTCAACAGCGTGCAGATCGGCTTTTCTTGTTGAAG GTTACACCGTTGGAACAACTAGATAGGAAGCATTTTGCCAAAGTTCCACATEST: gi|8367536|gb|BE050481.1|BE050481
genomic: ACTGTTCAACAGCGTGCAGATCGTCTTTTCTTGTTGAAGgtgatattaa ... tattttgcagGTTACACCGTTGGAACAACTAGATAGGAAGCATTTTGCCAAAGTTCCACAT
EST: AGAGTGGCGGTACTGTTCAACAGCGTGCAGATCGTCTTTTCTTGTTGAAG GTTACACCGTTGGAACAACTAGATAGGAAGCATTTTGCCAAAGTTCCACATEST: gi|31358406|gb|CD442763.1|CD442763
genomic: AGAGTGGCGGTACTGTTCAACAGCGTGCAGATCGTCTTTTCTTGTTGAAGgtgatattaa ... tattttgcagGTTACACCGTTGGAACAACTAGATAGGAAGCATTTTGCCAAAGTTCCACAT
EST: AGAGTGGCGGTACTGTTCAACAGCGTGCAGATCGTCTTTTCTTGTTGAAG GTTACACCGTTGGAACAACTAGATAGGAAGCATTTTGCCAAAGTTCCACATEST: gi|26456323|gb|CA827906.1|CA827906
genomic: AGAGTGGCGGTACTGTTCAACAGCGTGCAGATCGTCTTTTCTTGTTGAAGgtgatattaa ... tattttgcagGTTACACCGTTGGAACAACTAGATAGGAAGCATTTTGCCAAAGTTCCACAT
EST: AGAGTGGCGGTACTGTTCAACAGCGTGCAGATCGTCTTTTCTTGTTGAAG GTTACACCGTTGGAACAACTAGATAGGAAGCATTTTGCCAAAGTTCCACATEST: gi|61117874|gb|DN558835.1|DN558835
genomic: AGAGTGGCGGTACTGTTCAACAGCGTGCAGATCGTCTTTTCTTGTTGAAGgtgatattaa ... tattttgcagGTTACACCGTTGGAACAACTAGATAGGAAGCATTTTGCCAAAGTTCCACAT
EST: AGAGTGGCGGTACTGTTCAACAGCGTGCAGATCGTCTTTTCTTGTTGAAG GTTACACCGTTGGAACAACTAGATAGGAAGCATTTTGCCAAAGTTCCACATEST: gi|61117875|gb|DN558836.1|DN558836
genomic: AGAGTGGCGGTACTGTTCAACAGCGTGCAGATCGTCTTTTCTTGTTGAAGgtgatattaa ... tattttgcagGTTACACCGTTGGAACAACTAGATAGGAAGCATTTTGCCAAAGTTCCACAT
EST: AGAGTGGCGGTACTGTTCAACAGCGTGCAGATCGTCTTTTCTTGTTGAAG GTTACACCGTTGGAACAACTAGATAGGAAGCATTTTGCCAAAGTTCCACAT
genomic: AGAGTGGCGGTACTGTTCAACAGCGTGCAGATCGTCTTTTCTTGTTGAAGgtgatattaa ... tattttgcagGTTACACCGTTGGAACAACTAGATAGGAAGCATTTTGCCAAAGTTCCACAT
ttgttcttgcctttttaccattcattttgaactttttgttgattatattttgcagGTTACACCGTTGGAACAACTAGATAGGAAGCATTTTGCCAAAGTTCCACATACTAAAGATGGCTCAAACACAGCTCCTAATGGTAATGCTTTCAAGGAGG
tgttgat putative branch site (score: 83)
attttgaactttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatattaaagacgctagtgctactgctggttcatctattgttcttgcctttttaccattcattttgaactttttgttgattatattttgcagGTTACACCGTTGGAACAACTAGATAGGAAGCATTTTGCCAAAGTTCCACATACTAAAGATGGCTCAAACACAGCTCCTAATGGTAATGCTTTCAAGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG