1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagattggtgtttaactgcttgctttgtagggtttttttacccatgcatttgtttatgttgcttacacttgaaagcaattcatgtcagGAATAAAGCTTGTTGATCTGGTGATGCTTAAAGAGCAGTCTTCCCATGGGATTGCAGAACGTTGAGAAGGCTGTTTGAACATGATGGCAGTAGCAATCTG
species | Zea mays |
transcript | GRMZM2G110143_T04 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCGCAGCCCAGGCAGCGATAGCAAG GAATAAAGCTTGTTGATCTGGTGATGCTTAAAGAGCAGTCTTCCCATGGGAEST: gi|76290040|gb|DV029608.1|DV029608
genomic: CCGCAGCCCAGGCAGCGATAGCAAGgttagattgg ... ttcatgtcagGAATAAAGCTTGTTGATCTGGTGATGCTTAAAGAGCAGTCTTCCCATGGGA
EST: CTCCATCACCGAAGCGTGCAAGCTCCCGCAGCCCAGGCAGCGATAGCAAG GAATAAAGCTTGGTGATCTGGTGATGEST: gi|31558120|gb|CD527332.1|CD527332
genomic: CTCCATCACCGAAGCGTGCAAGCTCCCGCAGCCCAGGCAGCGATAGCAAGgttagattgg ... ttcatgtcagGAATAAAGCTTGTTGATCTGGTGATG
EST: CTCCATCACCGAAGCGTGCAAGCTCCCGCAGCCCAGGCAGCGATAGCAAG GAATAAAGCTTGTTGATCTGGTGATGCTTAAAGAGCAGTCTTCCCATGGGAEST: gi|74237054|gb|DT644968.1|DT644968
genomic: CTCCATCACCGAAGCGTGCAAGCTCCCGCAGCCCAGGCAGCGATAGCAAGgttagattgg ... ttcatgtcagGAATAAAGCTTGTTGATCTGGTGATGCTTAAAGAGCAGTCTTCCCATGGGA
EST: CTCCATCACCGAAGCGTGCAAGCTCCCGCAGCCCAGGCAGCGATAGCAAA GAATAAAGCTTGTTEST: gi|60400418|gb|DN233225.1|DN233225
genomic: CTCCATCACCGAAGCGTGCAAGCTCCCGCAGCCCAGGCAGCGATAGCAAGgttagattgg ... ttcatgtcagGAATAAAGCTTGTT
EST: CTCCATCACCGAAGCGTGCAAGCTCCCGCAGCCCAGGCAGCGATAGCAAG GAATAAAGCTTGTTGATCTGGTGATGCTTAAAGAGCAGTCTTCCCATGGGAEST: gi|149101748|gb|EE287365.2|EE287365
genomic: CTCCATCACCGAAGCGTGCAAGCTCCCGCAGCCCAGGCAGCGATAGCAAGgttagattgg ... ttcatgtcagGAATAAAGCTTGTTGATCTGGTGATGCTTAAAGAGCAGTCTTCCCATGGGA
EST: CTCCATCACCGAAGCGTGCAAGCTCCCGCAGCCCAGGCAGCGATAGCAAG GGATAAAGCTTGTTGATCEST: gi|71325769|gb|DR799565.1|DR799565
genomic: CTCCATCACCGAAGCGTGCAAGCTCCCGCAGCCCAGGCAGCGATAGCAAGgttagattgg ... ttcatgtcagGAATAAAGCTTGTTGATC
EST: CTCCATCACCGAAGCGTGCAAGCTCCCGCAGCCCAGGCAGCGATAGCAAG GATTAAAGCTTGGTGATCTGGTGAT
genomic: CTCCATCACCGAAGCGTGCAAGCTCCCGCAGCCCAGGCAGCGATAGCAAGgttagattgg ... ttcatgtcagGAATAAAGCTTGTTGATCTGGTGAT
ttttttacccatgcatttgtttatgttgcttacacttgaaagcaattcatgtcagGAATAAAGCTTGTTGATCTGGTGATGCTTAAAGAGCAGTCTTCCCATGGGATTGCAGAACGTTGAGAAGGCTGTTTGAACATGATGGCAGTAGCAATCTG
tgcttac putative branch site (score: 52)
atttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagattggtgtttaactgcttgctttgtagggtttttttacccatgcatttgtttatgttgcttacacttgaaagcaattcatgtcagGAATAAAGCTTGTTGATCTGGTGATGCTTAAAGAGCAGTCTTCCCATGGGATTGCAGAACGTTGAGAAGGCTGTTTGAACATGATGGCAGTAGCAATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT