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gtttgccactttgtctcctatatttcatataatattcatatctgtctactagttatgacattagttctatgtccaaacttctctcttgccttcataatctagAGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAGCAGGAGAGATGATTTGGAGTCACTTGCCTATA
species | Zea mays |
transcript | GRMZM2G017835_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTGCTAATGGGCAGCATGTTAGTTATGATCAACGTCCTGATGCCTTTAG AGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAGEST: gi|22819487|gb|BU499577.1|BU499577
genomic: ACTGCTAATGGGCAGCATGTTAGTTATGATCAACGTCCTGATGCCTTTAGgtttgccact ... cataatctagAGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAG
EST: ACTGCTAATGGGCAGCATGTTAGCTATGATCAACGTCCTGATGCCTTTAG AGGAACAGTCAGATAATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAEST: gi|26559748|gb|CA831983.1|CA831983
genomic: ACTGCTAATGGGCAGCATGTTAGTTATGATCAACGTCCTGATGCCTTTAGgtttgccact ... cataatctagAGGAACAGTCAGATA-TGCTAGTGTCCATGCACATTTAGGAAGAACCGCTA
EST: ACTGCTAATGGGCAGCATGTTAGTTATGATCAACGTCCTGATGCCTTTAG AGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAGEST: gi|148988749|gb|EE031658.2|EE031658
genomic: ACTGCTAATGGGCAGCATGTTAGTTATGATCAACGTCCTGATGCCTTTAGgtttgccact ... cataatctagAGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAG
EST: ACTGCTAATGGGCAGCATGTTAGTTATGATCAACGTCCTGATGCCTTTAG AGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAGEST: gi|31355100|gb|CD439457.1|CD439457
genomic: ACTGCTAATGGGCAGCATGTTAGTTATGATCAACGTCCTGATGCCTTTAGgtttgccact ... cataatctagAGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAG
EST: ACTGCTAATGGGCAGCATGTTAGTTATGATCAACGTCCTGATGCCTTTAG AGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAGEST: gi|60345255|gb|DN212228.1|DN212228
genomic: ACTGCTAATGGGCAGCATGTTAGTTATGATCAACGTCCTGATGCCTTTAGgtttgccact ... cataatctagAGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAG
EST: ACTGCTAATGGGCAGCATGTTAGTTATGATCAACGTCCTGATGCCTTTAG AGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAGEST: gi|32835164|gb|CD974842.1|CD974842
genomic: ACTGCTAATGGGCAGCATGTTAGTTATGATCAACGTCCTGATGCCTTTAGgtttgccact ... cataatctagAGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAG
EST: ACTGCTAATGGGCAGCATGTTAGTTATGATCAACGTCCTGATGCCTTTAG AGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAGEST: gi|31440950|gb|CD510381.1|CD510381
genomic: ACTGCTAATGGGCAGCATGTTAGTTATGATCAACGTCCTGATGCCTTTAGgtttgccact ... cataatctagAGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAG
EST: ACTGCTAATGGGCAGCATGTTAGTTATGATCAACGTCCTGATGCCTTTAG AGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAG
genomic: ACTGCTAATGGGCAGCATGTTAGTTATGATCAACGTCCTGATGCCTTTAGgtttgccact ... cataatctagAGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAG
actagttatgacattagttctatgtccaaacttctctcttgccttcataatctagAGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAGCAGGAGAGATGATTTGGAGTCACTTGCCTATA
cttctctcttgccttc CT-rich tract
ttcataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgccactttgtctcctatatttcatataatattcatatctgtctactagttatgacattagttctatgtccaaacttctctcttgccttcataatctagAGGAACAGTCAGATATGCTAGTGTCCATGCACATTTAGGAAGAACCGCTAGCAGGAGAGATGATTTGGAGTCACTTGCCTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG