1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgtttcacttgtctcagttattttgttggttgagttattttttacttttcccccatttcatttttcacttgatctgatatattctgaccactgtagAGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAATAATGTGAAGCTGGTTGCA
species | Zea mays |
transcript | GRMZM5G864166_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTATTGAAAAGAGATGATGTTGATGCAATAGAGATACATACCACTGGAAA AGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAAEST: gi|50329289|gb|CO524415.1|CO524415
genomic: TTATTGAAAAGAGATGATGTTGATGCAATAGAGATACATACCACTGGAAAgtatgtttca ... accactgtagAGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAA
EST: TTATTGAAAAGAGATGATGTTGATGCAATAGAGATACATACCACTGGAAA AGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAAEST: gi|76293255|gb|DV032823.1|DV032823
genomic: TTATTGAAAAGAGATGATGTTGATGCAATAGAGATACATACCACTGGAAAgtatgtttca ... accactgtagAGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAA
EST: TTATTGAAAAGAGATGATGTTGATGCAATAGAGATACATACCACTGGAAA AGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAAEST: gi|71772666|gb|DR970593.1|DR970593
genomic: TTATTGAAAAGAGATGATGTTGATGCAATAGAGATACATACCACTGGAAAgtatgtttca ... accactgtagAGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAA
EST: TTATTGAAAAGAGATGATGTTGATGCAACAGAGATACATACCACTGGAAA AGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAAEST: gi|32864298|gb|CF003980.1|CF003980
genomic: TTATTGAAAAGAGATGATGTTGATGCAATAGAGATACATACCACTGGAAAgtatgtttca ... accactgtagAGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAA
EST: TTATTGAAAAGCGATGATGTTGATGCAATAGAGATACATACCACTGGAAA AGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAAEST: gi|50335340|gb|CO530466.1|CO530466
genomic: TTATTGAAAAGAGATGATGTTGATGCAATAGAGATACATACCACTGGAAAgtatgtttca ... accactgtagAGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAA
EST: TTATTGAAAAGAGATGATGTTGATGCAATAGAGATACATACCACTGGAAA AGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAAEST: gi|74243604|gb|DT651518.1|DT651518
genomic: TTATTGAAAAGAGATGATGTTGATGCAATAGAGATACATACCACTGGAAAgtatgtttca ... accactgtagAGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAA
EST: TTATTGAAAAGAGATGATGTTGATGCAATAGAGATACATACCACTGGAAA AGGAACTGATATGTTCAATACCCTCTEST: gi|78088237|gb|DV516630.1|DV516630
genomic: TTATTGAAAAGAGATGATGTTGATGCAATAGAGATACATACCACTGGAAAgtatgtttca ... accactgtagAGGAACTGATATGTTCAATACCCTCT
EST: TTATTGAAAAGAGATGATGTTGATGCAATAGAGATACATACCACTGGAAA AGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATNCAEST: gi|50335836|gb|CO530962.1|CO530962
genomic: TTATTGAAAAGAGATGATGTTGATGCAATAGAGATACATACCACTGGAAAgtatgtttca ... accactgtagAGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCAT-CA
EST: TTATTGAAAAGAGATGATGTTGATGCAATAGAGATACATACCACTGGAAA AGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAA
genomic: TTATTGAAAAGAGATGATGTTGATGCAATAGAGATACATACCACTGGAAAgtatgtttca ... accactgtagAGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAA
ttacttttcccccatttcatttttcacttgatctgatatattctgaccactgtagAGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAATAATGTGAAGCTGGTTGCA
ttctgac putative branch site (score: 17)
atttcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttcacttgtctcagttattttgttggttgagttattttttacttttcccccatttcatttttcacttgatctgatatattctgaccactgtagAGGAACTGATATGTTCAATACCCTCTGGGACAACTTGAGTGGGTCCATCAATAATGTGAAGCTGGTTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG