1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgccttttggatctttccattatgaaatgtacacaagtacatgtgcttaacctgtttcttcttttgacagAGAGGCGTGGAACTTTTCCTTTGCTGGGCCATAATGCAAGGATTTGTCATGATGCTGCAGAATAGATATCAGCGTCAAAGATTATATACTAGGATTGCTT
species | Zea mays |
transcript | GRMZM2G154328_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCTAATTGTGCACGCAAGCAG AGAGGCGTGGAACTTTTCCTTTGCTGGGCCATAATGCAAGGATTTGTCATGEST: gi|211458058|gb|FL124704.1|FL124704
genomic: ACCTAATTGTGCACGCAAGCAGgtatgccttt ... cttttgacagAGAGGCGTGGAACTTTTCCTTTGCTGGGCCATAATGCAAGGATTTGTCATG
EST: TAAGTCTCACATGGGAGATAAAGGGGCAACCTAATTGTGCACGCAAGCAG AGAGGCGTGGAACTTTTCCTTTGCTGGGCCATAATGCAAGGATTTGTCATGEST: gi|60349253|gb|DN216226.1|DN216226
genomic: TAAGTCTCACATGGGAGATAAAGGGGCAACCTAATTGTGCACGCAAGCAGgtatgccttt ... cttttgacagAGAGGCGTGGAACTTTTCCTTTGCTGGGCCATAATGCAAGGATTTGTCATG
EST: TAAGTCTCACATGGGAGATAAAGGGGCAACCTAATTGTGCACGCAAGCAG AGAGGCGTGGAACTTTTCCTTTGCTGGGCCATAATGCAAGGATTTGTCATGEST: gi|91050504|gb|EB160922.1|EB160922
genomic: TAAGTCTCACATGGGAGATAAAGGGGCAACCTAATTGTGCACGCAAGCAGgtatgccttt ... cttttgacagAGAGGCGTGGAACTTTTCCTTTGCTGGGCCATAATGCAAGGATTTGTCATG
EST: GGGCAACCTAATTGTGCACGCAAGCAG AGAGGCGTGGAACTTTTCCTTTGCTGGGCCATAATGCAAGGATTTGTCATG
genomic: GGGCAACCTAATTGTGCACGCAAGCAGgtatgccttt ... cttttgacagAGAGGCGTGGAACTTTTCCTTTGCTGGGCCATAATGCAAGGATTTGTCATG
tccattatgaaatgtacacaagtacatgtgcttaacctgtttcttcttttgacagAGAGGCGTGGAACTTTTCCTTTGCTGGGCCATAATGCAAGGATTTGTCATGATGCTGCAGAATAGATATCAGCGTCAAAGATTATATACTAGGATTGCTT
gcttaac putative branch site (score: 105)
cctgtttcttctttt CT-rich tract
tatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccttttggatctttccattatgaaatgtacacaagtacatgtgcttaacctgtttcttcttttgacagAGAGGCGTGGAACTTTTCCTTTGCTGGGCCATAATGCAAGGATTTGTCATGATGCTGCAGAATAGATATCAGCGTCAAAGATTATATACTAGGATTGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG