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...ggaccattacattcacaaagacttaggcttctcctatcttgattttttattgcagcttctattatcttttcagtattaccaatgtggtgcctttatgcagGCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG
species | Zea mays |
transcript | GRMZM2G138886_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGCAACAGAATATGTTAAAGAGCTTTACACCTTTTACAGAGAAAATGAG GCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAACEST: gi|84908772|gb|DW404650.1|DW404650
genomic: CTGCAACAGAATATGTTAAAGAGCTTTACACCTTTTACAGAGAAAATGAGgtgatctatt ... ctttatgcagGCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAAC
EST: CCTTTTACAGAGAAAATGAG GCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAACEST: gi|76283026|gb|DV022594.1|DV022594
genomic: CCTTTTACAGAGAAAATGAGgtgatctatt ... ctttatgcagGCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAAC
EST: CTGCAACAGAATATGTTAAAGAGCTTTACACCTTTTACAGAGAAAATGAG GCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAACEST: gi|50324450|gb|CO519576.1|CO519576
genomic: CTGCAACAGAATATGTTAAAGAGCTTTACACCTTTTACAGAGAAAATGAGgtgatctatt ... ctttatgcagGCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAAC
EST: CTGCAACAGAATATGTTAAAGAGCTTTACACCTTTTACAGAGAAAATGAG GCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAACEST: gi|76294034|gb|DV033602.1|DV033602
genomic: CTGCAACAGAATATGTTAAAGAGCTTTACACCTTTTACAGAGAAAATGAGgtgatctatt ... ctttatgcagGCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAAC
EST: CTGCAACAGAATATGTTAAAGAGCTTTACACCTTTTACAGAGAAAATGAG GCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAACEST: gi|71439376|gb|DR820426.1|DR820426
genomic: CTGCAACAGAATATGTTAAAGAGCTTTACACCTTTTACAGAGAAAATGAGgtgatctatt ... ctttatgcagGCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAAC
EST: CTGCAACAGAATATGTTAAAGAGCTTTACACCTTTTACAGAGAAAATGAG GCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAACEST: gi|211249460|gb|FL156680.1|FL156680
genomic: CTGCAACAGAATATGTTAAAGAGCTTTACACCTTTTACAGAGAAAATGAGgtgatctatt ... ctttatgcagGCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAAC
EST: CTGCAACAGAATATGTTAAAGAGCTTTACACCTTTTACAGAGAAAATGAG GCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAACEST: gi|211247239|gb|FL156679.1|FL156679
genomic: CTGCAACAGAATATGTTAAAGAGCTTTACACCTTTTACAGAGAAAATGAGgtgatctatt ... ctttatgcagGCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAAC
EST: CAACAGAATATGTTGAAGAGCTTTACACCTTTTACAGAGAAAATGAG GCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAACEST: gi|61118386|gb|DN559347.1|DN559347
genomic: CAACAGAATATGTTAAAGAGCTTTACACCTTTTACAGAGAAAATGAGgtgatctatt ... ctttatgcagGCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAAC
EST: CTGCAACAGAATATGTTAAAGAGCTTTACACCTTTTACAGAGAAAATGAG GCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAAC
genomic: CTGCAACAGAATATGTTAAAGAGCTTTACACCTTTTACAGAGAAAATGAGgtgatctatt ... ctttatgcagGCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAAC
tttattgcagcttctattatcttttcagtattaccaatgtggtgcctttatgcagGCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG
tgccttt CT-rich tract
ttctattatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaccattacattcacaaagacttaggcttctcctatcttgattttttattgcagcttctattatcttttcagtattaccaatgtggtgcctttatgcagGCTAAGAGTTGTGTAAGGCCAGATTACATGTCCAGCCAACAAGACATAAACTCAAAGATGAGAGCAATTCTGATTGACTGGCTGATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - -cattcac
- - - - - - - - - - - - - gcttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggtgc