1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tctttcttatgttgaatcaccacgtggtatatgcattcctccaaatataatgcacatttgaactaaattgatgctagttttatgtcatactctcgtgcagGAGTGCATTAGCTTGGCGAAAGAAAGGAGGCTGAGGCTAAGAGAAATTCTGATAGACTCTGTCAAAGCCATGGAAGTCGACCATACTGAATAATTCTGCA
species | Zea mays |
transcript | GRMZM2G123305_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTCATTACAAAAAGTTGGAGGCACAGTGACATCCATGGCAACTATTAAG GAGTGCATTAGCTTGGCGAAAGAAAGGAGGCTGAGGCTAAGAGAAATTCTGEST: gi|44901341|gb|CK827886.1|CK827886
genomic: TGTCATTACAAAAAGTTGGAGGCACAGTGACATCCATGGCAACTATTAAGgttagttaat ... tctcgtgcagGAGTGCATTAGCTTGGCGAAAGAAAGGAGGCTGAGGCTAAGAGAAATTCTG
EST: TGTCATTACAAAAAGTTGGAGGCACAGTGACATCCATGGCAACTATTAAG GAGTGCATTAGCTTGGCGAAAGAAAGGAGGCTGAGGCTAAGAGAAATTCTGEST: gi|5607727|gb|AI901394.1|AI901394
genomic: TGTCATTACAAAAAGTTGGAGGCACAGTGACATCCATGGCAACTATTAAGgttagttaat ... tctcgtgcagGAGTGCATTAGCTTGGCGAAAGAAAGGAGGCTGAGGCTAAGAGAAATTCTG
EST: TGTCATTNCAAAAAGTTGGAGGCCCAGTGNCATCCATGGCAACTATTAAG GAGTGCATTAGCTTGGCGAAAGAAAGGAGGCTGAGGCTAAGAGAAATTCTG
genomic: TGTCATTACAAAAAGTTGGAGGCACAGTGACATCCATGGCAACTATTAAGgttagttaat ... tctcgtgcagGAGTGCATTAGCTTGGCGAAAGAAAGGAGGCTGAGGCTAAGAGAAATTCTG
tataatgcacatttgaactaaattgatgctagttttatgtcatactctcgtgcagGAGTGCATTAGCTTGGCGAAAGAAAGGAGGCTGAGGCTAAGAGAAATTCTGATAGACTCTGTCAAAGCCATGGAAGTCGACCATACTGAATAATTCTGCA
tactctc CT-rich tract
atttgaactaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttcttatgttgaatcaccacgtggtatatgcattcctccaaatataatgcacatttgaactaaattgatgctagttttatgtcatactctcgtgcagGAGTGCATTAGCTTGGCGAAAGAAAGGAGGCTGAGGCTAAGAGAAATTCTGATAGACTCTGTCAAAGCCATGGAAGTCGACCATACTGAATAATTCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - -tgttgaa
- - - - - - - - -caccacg
- - - - - - - - - - - - - - - -tgcattc
- - - - - - - - - - - - - - - - - - - - - - - - aatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct