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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccttcttcacgggcaggattgctaagttgactttatctcttgtgcatatgagttttttttttgggggggggtagatctgacgttttcccccttgctttttacagCTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCCAG

Basic information

species Zea mays
transcript GRMZM2G039889_T05
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78107919|gb|DV526337.1|DV526337
EST:     GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG                         CTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
genomic: GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGgtaccttctt ... ctttttacagCTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
EST: gi|76910226|gb|DV163762.1|DV163762
EST:     GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG                         CTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
genomic: GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGgtaccttctt ... ctttttacagCTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
EST: gi|50336508|gb|CO531634.1|CO531634
EST:     GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG                         CTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
genomic: GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGgtaccttctt ... ctttttacagCTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
EST: gi|78123847|gb|DV542231.1|DV542231
EST:     GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG                         CTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
genomic: GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGgtaccttctt ... ctttttacagCTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
EST: gi|78115266|gb|DV533654.1|DV533654
EST:     GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG                         CTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
genomic: GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGgtaccttctt ... ctttttacagCTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
EST: gi|76016911|gb|DT944081.1|DT944081
EST:     GGTGAAGGGGATTGCTCGTTTTATATGAAGACAGGCAG                         CTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
genomic: GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGgtaccttctt ... ctttttacagCTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
EST: gi|71299499|gb|DR785760.1|DR785760
EST:     GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG                         CTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
genomic: GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGgtaccttctt ... ctttttacagCTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
EST: gi|71326312|gb|DR799844.1|DR799844
EST:     AATGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG                         CTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
genomic: GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGgtaccttctt ... ctttttacagCTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
EST: gi|148952088|gb|EC897879.2|EC897879
EST:     GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG                         CTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
genomic: GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGgtaccttctt ... ctttttacagCTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
EST: gi|60400549|gb|DN233356.1|DN233356
EST:     GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG                         CTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
genomic: GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGgtaccttctt ... ctttttacagCTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
EST: gi|71762950|gb|DR960887.1|DR960887
EST:     GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG                         CTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
genomic: GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGgtaccttctt ... ctttttacagCTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
EST: gi|91052439|gb|EB162857.1|EB162857
EST:     GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG                         CTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC
genomic: GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGgtaccttctt ... ctttttacagCTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagttttttttttgggggggggtagatctgacgttttcccccttgctttttacagCTGCAAATATGGTTCTATTTGTCGCTTCAACCATCCTGATCGGCCAGGGCCAG
                         atctgac  putative branch site (score: 3)
                               cgttttcccccttgct  CT-rich tract
     tttttttt  TA-rich tract