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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcaatctctaccgtccgtttcgctgcttctttcttgccaatggttcaactcactccaataatgtcattctgtttttgttagcagAAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGGAGTTAAAATCCTTGACCGATTCAATCGGTCATACCAGGGAACCCATAAA

Basic information

species Zea mays
transcript GRMZM2G363460_T03
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78075300|gb|DV503734.1|DV503734
EST:     TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG                         AAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG
EST: gi|20300876|gb|BQ163819.1|BQ163819
EST:     TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG                         AAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG
EST: gi|148941345|gb|EC886254.2|EC886254
EST:     TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG                         AAAAGAAGATACTAGTGACGTTGACANCA-GCTCTAGATTCCCAAGCCAAG
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGACA-CAAGCTCTAGATTCCCAAGCCAAG
EST: gi|74242480|gb|DT650394.1|DT650394
EST:     TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG                         C
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcag-
EST: gi|74242480|gb|DT650394.1|DT650394
EST:     TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG                         C
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcag-
EST: gi|31355282|gb|CD439639.1|CD439639
EST:     TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG                         C
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcag-
EST: gi|31355282|gb|CD439639.1|CD439639
EST:     TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG                         C
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcag-
EST: gi|149085990|gb|EE175517.2|EE175517
EST:     TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG                         AAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG
EST: gi|76912800|gb|DV164886.1|DV164886
EST:     TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG                         AAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG
EST: gi|31354170|gb|CD438527.1|CD438527
EST:     TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG                         AAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG
EST: gi|71442954|gb|DR824004.1|DR824004
EST:     TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG                         AAAAGAAGATACTAGTGACGTTGACACAAGCT
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGACACAAGCT
EST: gi|148999595|gb|EE036575.2|EE036575
EST:     TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG                         AAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGC-AAGG
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG
EST: gi|71312718|gb|DR792887.1|DR792887
EST:     TTCTGCTATTGCCAAAACAAAACAACAACTGCTTGCTTCAAAGGATGAAG                         AAAAGAAGATACTAGTGACGTTGAC
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGAC
EST: gi|76913179|gb|DV165031.1|DV165031
EST:     TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAG                         AAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCTCAAGCCAAGG
genomic: TTCTGCTATTGCCAAAACAAACCAACAACTGCTTGCTTCAAAGGATGAAGgtttcaatct ... ttgttagcagAAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttgccaatggttcaactcactccaataatgtcattctgtttttgttagcagAAAAGAAGATACTAGTGACGTTGACACAAGCTCTAGATTCCCAAGCCAAGGAGTTAAAATCCTTGACCGATTCAATCGGTCATACCAGGGAACCCATAAA
                 aactcac  putative branch site (score: 2)
                                     ttctgttttt  putative PPT
                                          tttttgtta  TA-rich tract