1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtacttgtacttctaatttgtgttgaccctcaaaaagggatgggttttgggcatctttgtcatggctctgggctctggcttactgtcatgtttcgcaatgcagGGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGATATTGACAGTGCAGACTCGGGGAACCCGCTTGCTGCAACAGAATATGTTA
species | Zea mays |
transcript | GRMZM2G138886_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATG GGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGATEST: gi|148972285|gb|EE023184.2|EE023184
genomic: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATGgtacttgtac ... cgcaatgcagGGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGAT
EST: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATG GGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGATEST: gi|211249468|gb|FL156688.1|FL156688
genomic: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATGgtacttgtac ... cgcaatgcagGGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGAT
EST: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATG GGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGATEST: gi|76283026|gb|DV022594.1|DV022594
genomic: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATGgtacttgtac ... cgcaatgcagGGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGAT
EST: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATG GGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGATEST: gi|211249467|gb|FL156687.1|FL156687
genomic: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATGgtacttgtac ... cgcaatgcagGGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGAT
EST: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATG GGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGATEST: gi|50324450|gb|CO519576.1|CO519576
genomic: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATGgtacttgtac ... cgcaatgcagGGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGAT
EST: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATG GGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGATEST: gi|76294034|gb|DV033602.1|DV033602
genomic: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATGgtacttgtac ... cgcaatgcagGGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGAT
EST: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATG GGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGATEST: gi|211004196|gb|FK981412.1|FK981412
genomic: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATGgtacttgtac ... cgcaatgcagGGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGAT
EST: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATG GGTGCGACAGAGAAACA-G-ACATTATGANCGAAGATGA-TTNGCTCATGGEST: gi|71439376|gb|DR820426.1|DR820426
genomic: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATGgtacttgtac ... cgcaatgcagGGTGCGACAGAGAA-CAAGGACATTATGAACGAAGATGAATT-GCTCATGG
EST: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATG GGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGATEST: gi|30307157|gb|CD001830.1|CD001830
genomic: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATGgtacttgtac ... cgcaatgcagGGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGAT
EST: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATG GGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGATEST: gi|149081651|gb|EE170801.2|EE170801
genomic: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATGgtacttgtac ... cgcaatgcagGGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGAT
EST: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATG GGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGAAEST: gi|211249460|gb|FL156680.1|FL156680
genomic: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATGgtacttgtac ... cgcaatgcagGGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGAT
EST: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATG G-TGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGATEST: gi|61118386|gb|DN559347.1|DN559347
genomic: ACGTGGAACTCTACGAGCTGGTCGACGGTAGTGATAGTGACATCGACATGgtacttgtac ... cgcaatgcagGGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGAT
EST: TAGTGATAGTGACATCGACATG GGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGAT
genomic: TAGTGATAGTGACATCGACATGgtacttgtac ... cgcaatgcagGGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGAT
gggcatctttgtcatggctctgggctctggcttactgtcatgtttcgcaatgcagGGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGATATTGACAGTGCAGACTCGGGGAACCCGCTTGCTGCAACAGAATATGTTA
ggcttac putative branch site (score: 49)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttgtacttctaatttgtgttgaccctcaaaaagggatgggttttgggcatctttgtcatggctctgggctctggcttactgtcatgtttcgcaatgcagGGTGCGACAGAGAACAAGGACATTATGAACGAAGATGAATTGCTCATGGATATTGACAGTGCAGACTCGGGGAACCCGCTTGCTGCAACAGAATATGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC