1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcttctactttatcttcacatatcgctttagtttatcactgcagcattgactgtacccaaatagcttgtatcactcagcacattttctcccatattgcagGGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG
species | Zea mays |
transcript | GRMZM2G039889_T05 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAA GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGEST: gi|76910226|gb|DV163762.1|DV163762
genomic: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAAgtatgcattt ... catattgcagGGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG
EST: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAA GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGEST: gi|50336508|gb|CO531634.1|CO531634
genomic: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAAgtatgcattt ... catattgcagGGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG
EST: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAA GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGEST: gi|78123847|gb|DV542231.1|DV542231
genomic: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAAgtatgcattt ... catattgcagGGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG
EST: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAA GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGEST: gi|78115266|gb|DV533654.1|DV533654
genomic: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAAgtatgcattt ... catattgcagGGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG
EST: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAA GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGEST: gi|76016911|gb|DT944081.1|DT944081
genomic: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAAgtatgcattt ... catattgcagGGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG
EST: TGTAACGCAAAGGGGCTTCCTATAAGACAA GGTGAAGGGGATTGCTCGTTTTATATGAAGACAGGCAGEST: gi|71299499|gb|DR785760.1|DR785760
genomic: TGTAACGCAAAGGGGCTTCCTATAAGACAAgtatgcattt ... catattgcagGGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG
EST: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAA GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGEST: gi|71326312|gb|DR799844.1|DR799844
genomic: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAAgtatgcattt ... catattgcagGGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG
EST: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAA AATGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGEST: gi|148952088|gb|EC897879.2|EC897879
genomic: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAAgtatgcattt ... catattgcagGGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG
EST: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAA GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGEST: gi|60400549|gb|DN233356.1|DN233356
genomic: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAAgtatgcattt ... catattgcagGGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG
EST: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAA GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGEST: gi|71762950|gb|DR960887.1|DR960887
genomic: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAAgtatgcattt ... catattgcagGGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG
EST: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAA GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAGEST: gi|91052439|gb|EB162857.1|EB162857
genomic: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAAgtatgcattt ... catattgcagGGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG
EST: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAA GGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG
genomic: CAGATGCCCCGACCGAGGCGTGTAACGCAAAGGGGCTTCCTATAAGACAAgtatgcattt ... catattgcagGGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG
attgactgtacccaaatagcttgtatcactcagcacattttctcccatattgcagGGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG
cattgac putative branch site (score: 3)
ttttctcccatatt putative PPT
acatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttctactttatcttcacatatcgctttagtttatcactgcagcattgactgtacccaaatagcttgtatcactcagcacattttctcccatattgcagGGTGAAGTGGATTGCTCGTTTTATATGAAGACAGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA