1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttggattcgatgacatttactgctgaaattttcttacttgtaagccatgctaacgcttctatgctctgcttgctgcagTGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCAAATGCTGAATGCCATCATTAGAAACGAGAGGGATGGG
species | Zea mays |
transcript | GRMZM5G840582_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCAGGAAGGAAGTTGCTGACTTCATCCACAAGCGTGATGGATATCCGAG TGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCAEST: gi|148974460|gb|EE025239.2|EE025239
genomic: ATCAGGAAGGAAGTTGCTGACTTCATCCACAAGCGTGATGGATATCCGAGgttggattcg ... cttgctgcagTGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCA
EST: ATCAGGAAGGAAGTTGCTGACTTCATCCACAAGCGTGATGGATATCCGAG TGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCAEST: gi|149026983|gb|EE046321.2|EE046321
genomic: ATCAGGAAGGAAGTTGCTGACTTCATCCACAAGCGTGATGGATATCCGAGgttggattcg ... cttgctgcagTGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCA
EST: ATCAGGAAGGAAGTTGCTGACTTCATCCACAAGCGTGATGGATATCCGAG TGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCAEST: gi|211033758|gb|FL005921.1|FL005921
genomic: ATCAGGAAGGAAGTTGCTGACTTCATCCACAAGCGTGATGGATATCCGAGgttggattcg ... cttgctgcagTGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCA
EST: TCAGGAAGGAAAGT-GCTGACTTCATCCACAAGCGTGATGGATATCCGAG TGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAAGGTGTGATGCEST: gi|149070661|gb|EE159075.2|EE159075
genomic: TCAGGAAGGAA-GTTGCTGACTTCATCCACAAGCGTGATGGATATCCGAGgttggattcg ... cttgctgcagTGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAA-GGTGTGATGC
EST: ATCAGGAAGGAAGTTGCTGACTTCATCCACAAGCGTGATGGATATCCGAG TGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCAEST: gi|91048303|gb|EB158721.1|EB158721
genomic: ATCAGGAAGGAAGTTGCTGACTTCATCCACAAGCGTGATGGATATCCGAGgttggattcg ... cttgctgcagTGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCA
EST: ATCAGGAAGGAAGTTGCTGACTTCATCCACAAGCGTGATGGATATCCGAG TGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCAEST: gi|78112476|gb|DV530870.1|DV530870
genomic: ATCAGGAAGGAAGTTGCTGACTTCATCCACAAGCGTGATGGATATCCGAGgttggattcg ... cttgctgcagTGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCA
EST: ATCAGGAAGGAAGTTGCTGACTTCATCCACAAGCGTGATGGATATCCGAG TGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCAEST: gi|211033757|gb|FL005920.1|FL005920
genomic: ATCAGGAAGGAAGTTGCTGACTTCATCCACAAGCGTGATGGATATCCGAGgttggattcg ... cttgctgcagTGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCA
EST: ATCAGGAAGGAAGTTGCTGACTTCATCCACAAGCGTGATGGATATCCGAG TGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCAEST: gi|149041122|gb|EE046896.2|EE046896
genomic: ATCAGGAAGGAAGTTGCTGACTTCATCCACAAGCGTGATGGATATCCGAGgttggattcg ... cttgctgcagTGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCA
EST: ATCAGGAAGGAAGTTGCTGACTTCATCCACAAGCGTGATGGATATCCGAG TGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCA
genomic: ATCAGGAAGGAAGTTGCTGACTTCATCCACAAGCGTGATGGATATCCGAGgttggattcg ... cttgctgcagTGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCA
tgaaattttcttacttgtaagccatgctaacgcttctatgctctgcttgctgcagTGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCAAATGCTGAATGCCATCATTAGAAACGAGAGGGATGGG
tgctaac putative branch site (score: 46)
ctctgctt putative PPT
ttttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggattcgatgacatttactgctgaaattttcttacttgtaagccatgctaacgcttctatgctctgcttgctgcagTGACCCAGAACTCATTTACCTGACAGACGGCGCCAGCAAAGGTGTGATGCAAATGCTGAATGCCATCATTAGAAACGAGAGGGATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG