1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtagccagacgccgccgctcctcaacactcagctagccctctgttttctcatgacgcaaattaaatttacagaaagcgttgctcctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACCCAACAGCAGACCAGTTCGTCTTCCTCGTGCTTCGTGATAAGGGAAGCTG
species | Zea mays |
transcript | GRMZM2G553379_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACCEST: gi|71314645|gb|DR793944.1|DR793944
genomic: AGGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: AGGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACCEST: gi|78089928|gb|DV518302.1|DV518302
genomic: AGGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: TGCCGCAGGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACCEST: gi|76011625|gb|DT938795.1|DT938795
genomic: TGCCGCAGGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: TGCCGCAGGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAG CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACCEST: gi|8930412|gb|BE225176.1|BE225176
genomic: TGCCGCAGGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
EST: AGGAGAAGTCGCTGCAGGAGGAGACCAAGGTTCTGCAGAAGGAG CTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
genomic: AGGAGAAGTCGCTGCAGGAGGAGAACAAGGTTCTGCAGAAGGAGgtagccagac ... ctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACC
tctgttttctcatgacgcaaattaaatttacagaaagcgttgctcctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACCCAACAGCAGACCAGTTCGTCTTCCTCGTGCTTCGTGATAAGGGAAGCTG
ctcctgcct CT-rich tract
aaattaaatttacaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagccagacgccgccgctcctcaacactcagctagccctctgttttctcatgacgcaaattaaatttacagaaagcgttgctcctgcctgcagCTCGCGGAGAAGCAGAAAGCCCAGCGGAAGCAAGTGCAATGGGGCCAAACCCAACAGCAGACCAGTTCGTCTTCCTCGTGCTTCGTGATAAGGGAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG