1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcagactctctctgcctctgcttctgcttcgccatttgtgccatgtcagacaggtcctcatggctggcctctgtttcagGTTGCTCCCAAGCCCAACACGTTCCTGCCGTTCGGCAACGGGACCCACTCGTGCCCGGGCAACGAGCTCGCCAAGCTGGAGATGCTCGTGCTCTTCCACC
species | Zea mays |
transcript | GRMZM2G179147_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCCCCGACCACTTCCCCTGCCCGGAGAAGTTCGACCCCTCCCGATTCGAG GTTGCTCCCAAGCCCAACACGTTCCTGCCGTTCGGCAACGGGACCCACTCGEST: gi|18163321|gb|BM333160.1|BM333160
genomic: GCCCCGACCACTTCCCCTGCCCGGAGAAGTTCGACCCCTCCCGATTCGAGgtcagactct ... tctgtttcagGTTGCTCCCAAGCCCAACACGTTCCTGCCGTTCGGCAACGGGACCCACTCG
EST: GCCCCGACCACTTCCCCTGCCCGGAGAAGTTCGACCCCTCCCGATTCGAG GTTGCTCCCAAGCCCAACACGTTCCTGCCGTTCGGCAACGGGACCCACTCGEST: gi|211138229|gb|FL464602.1|FL464602
genomic: GCCCCGACCACTTCCCCTGCCCGGAGAAGTTCGACCCCTCCCGATTCGAGgtcagactct ... tctgtttcagGTTGCTCCCAAGCCCAACACGTTCCTGCCGTTCGGCAACGGGACCCACTCG
EST: GCCCCGACCACTTCCCCTGCCCGGAGAAGTTCGACCCCTCCCGATTCGAG GTTGCTCCCAAGCCCAACACGTTCCTGCCGTTCGGCAACGGGACCCACTCGEST: gi|71423547|gb|DR806071.1|DR806071
genomic: GCCCCGACCACTTCCCCTGCCCGGAGAAGTTCGACCCCTCCCGATTCGAGgtcagactct ... tctgtttcagGTTGCTCCCAAGCCCAACACGTTCCTGCCGTTCGGCAACGGGACCCACTCG
EST: GCCCCGACCACTTCCCCTGCCCGGAGAAGTTCGACCCCTCCCGATTCGAG GTTGCTCCCAAGCCCAACACGTTCCTGCCGTTCGGCAACGGGACCCACTCGEST: gi|18162008|gb|BM331847.1|BM331847
genomic: GCCCCGACCACTTCCCCTGCCCGGAGAAGTTCGACCCCTCCCGATTCGAGgtcagactct ... tctgtttcagGTTGCTCCCAAGCCCAACACGTTCCTGCCGTTCGGCAACGGGACCCACTCG
EST: GCGCCGACCACTTCCCCTGCCCGGAGAAGTTCGACCCCTCCCGATTCAAG GTTGCTCCCAAGCCCAACACGTTCCTGCCGTTCGGCAACGGGACCCACTCG
genomic: GCCCCGACCACTTCCCCTGCCCGGAGAAGTTCGACCCCTCCCGATTCGAGgtcagactct ... tctgtttcagGTTGCTCCCAAGCCCAACACGTTCCTGCCGTTCGGCAACGGGACCCACTCG
tgcttcgccatttgtgccatgtcagacaggtcctcatggctggcctctgtttcagGTTGCTCCCAAGCCCAACACGTTCCTGCCGTTCGGCAACGGGACCCACTCGTGCCCGGGCAACGAGCTCGCCAAGCTGGAGATGCTCGTGCTCTTCCACC
cctctgtttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagactctctctgcctctgcttctgcttcgccatttgtgccatgtcagacaggtcctcatggctggcctctgtttcagGTTGCTCCCAAGCCCAACACGTTCCTGCCGTTCGGCAACGGGACCCACTCGTGCCCGGGCAACGAGCTCGCCAAGCTGGAGATGCTCGTGCTCTTCCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG