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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcaattgtgttagaatatagatgagtgctcaagttaatatccaactaaaatgaatatactcgtgctaattaccgcacaactctccagGTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGATATGACTCAGAAATACAAGGACGCTTCCGTTGACAATAAAAATCTAACAG

Basic information

species Zea mays
transcript GRMZM2G073427_T07
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211402646|gb|FL367058.1|FL367058
EST:     GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG                         GTTTCCAGGTTTACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGAT
genomic: GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAGgtttcaattg ... aactctccagGTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGAT
EST: gi|211541225|gb|FL353516.1|FL353516
EST:     GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG                         GTTTCCAGGTTAACGTCTGAGAATGC
genomic: GGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAGgtttcaattg ... aactctccagGTTTCCAGGTTAACGTCTGAGAATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaatatccaactaaaatgaatatactcgtgctaattaccgcacaactctccagGTTTCCAGGTTAACGTCTGAGAATGCATCTTTGCTGAAGCGACTGGCTGATATGACTCAGAAATACAAGGACGCTTCCGTTGACAATAAAAATCTAACAG
                              tgctaat  putative branch site (score: 2)
                                               ctctcc  putative PPT
          aactaaaatgaatata  TA-rich tract