1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agaaggtattcacaagaatcttggcatttaacagacctgcacaccttgactttatgaaaagggacatgtcttcaggaacacagtactgttttaattccagGTGAACATAGCCGAGGAAGCTGTCAGGAGGCTAACTGGGATCACCCTCATGCTACCGACCGCTTTTGAGAAGCCCACGAGCAGCGCGCCCCTGTCATCAT
species | Zea mays |
transcript | GRMZM2G073427_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCGTTGACAATAAAAATCTAACAGTTGATGTTGAGACTATGAGGAGAAAG GTGAACATAGCCGAGGAAGCTGTCAGGAGGCTAACTGGGATCACCCTCATGEST: gi|28984973|gb|BQ539321.2|BQ539321
genomic: CCGTTGACAATAAAAATCTAACAGTTGATGTTGAGACTATGAGGAGAAAGgttcgttcgt ... ttaattccagGTGAACATAGCCGAGGAAGCTGTCAGGAGGCTAACTGGGATCACCCTCATG
EST: CCGTTGACAATAAAAATCTAACAGTTGATGTTGAGACTATGAGGAGAAAG GTGAACATAGCCGAGGAAGCTGTCAGGAGGCTAACTGGGATCACCCTCATG
genomic: CCGTTGACAATAAAAATCTAACAGTTGATGTTGAGACTATGAGGAGAAAGgttcgttcgt ... ttaattccagGTGAACATAGCCGAGGAAGCTGTCAGGAGGCTAACTGGGATCACCCTCATG
ttgactttatgaaaagggacatgtcttcaggaacacagtactgttttaattccagGTGAACATAGCCGAGGAAGCTGTCAGGAGGCTAACTGGGATCACCCTCATGCTACCGACCGCTTTTGAGAAGCCCACGAGCAGCGCGCCCCTGTCATCAT
ttttaat putative branch site (score: 3)
ctgtttt CT-rich tract
tttatgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaggtattcacaagaatcttggcatttaacagacctgcacaccttgactttatgaaaagggacatgtcttcaggaacacagtactgttttaattccagGTGAACATAGCCGAGGAAGCTGTCAGGAGGCTAACTGGGATCACCCTCATGCTACCGACCGCTTTTGAGAAGCCCACGAGCAGCGCGCCCCTGTCATCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG