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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttttgaaatttggggatcaatatatgcggagggctttaaggttcctccatgtgctttttttaaaacttaccacaccttttttgggttctgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG

Basic information

species Zea mays
transcript GRMZM2G147500_T04
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147500_T05 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g14460.1 (Oryza sativa), 3'ss of exon 2
--------tcttttgaaatttggggatcaatatatgcggagggctttaaggttcctccatgtgctttttttaaaacttaccacaccttttttgggttctgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG
        |    ||   ||||||  | ||   |  | |      |  |   ||  |||||||||| |||        |||  | | |||||   |||||      |||| |||||||| ||||| || |||||||||||||| || || |||||||| ||| | || ||||||||| |||||||||| ||||| | ||| |||||
cggaaatataacatgttttttgggtgttaagtgagccagtcttaatgtaaaatcagccatgtgcttgttt--------acccaaacctttttcatttctgcacattagGTATCGATTGCGAGAACGTGCAACTGCATCTATGCTCTTCTTCAGCAGCGGCAGCGTGATATTGAGTTCCGGGAGTCTACCAATGATCTGCGTCAGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31611780|gb|CD568402.1|CD568402
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGTCT-GAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCG
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTG-CAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCG
EST: gi|211122097|gb|FL004251.1|FL004251
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|33094171|gb|CF054165.1|CF054165
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAAAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211122868|gb|FL004257.1|FL004257
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211122100|gb|FL004254.1|FL004254
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|33102758|gb|CF062718.1|CF062718
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211124438|gb|FL004293.1|FL004293
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211124442|gb|FL004297.1|FL004297
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|22715261|gb|BU197668.1|BU197668
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGG
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211124431|gb|FL004286.1|FL004286
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211122872|gb|FL004261.1|FL004261
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211122877|gb|FL004266.1|FL004266
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAS--A
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211123651|gb|FL004271.1|FL004271
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAANTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211124436|gb|FL004291.1|FL004291
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211123653|gb|FL004273.1|FL004273
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211122095|gb|FL004249.1|FL004249
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211122881|gb|FL004270.1|FL004270
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211124441|gb|FL004296.1|FL004296
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCANGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211124440|gb|FL004295.1|FL004295
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|26559425|gb|CA831660.1|CA831660
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGG
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211122880|gb|FL004269.1|FL004269
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTA
EST: gi|211122101|gb|FL004255.1|FL004255
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|33095529|gb|CF055523.1|CF055523
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211123664|gb|FL004284.1|FL004284
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211125213|gb|FL004301.1|FL004301
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211122098|gb|FL004252.1|FL004252
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211124432|gb|FL004287.1|FL004287
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCT-CAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211124434|gb|FL004289.1|FL004289
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGNGNTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|211123652|gb|FL004272.1|FL004272
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|148964224|gb|EE015404.2|EE015404
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|22133783|gb|BQ833900.1|BQ833900
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGG
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA
EST: gi|26558350|gb|CA830585.1|CA830585
EST:     TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCG                         GTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGG
genomic: TCGTCACCTTCGGATTCCCGGCATCTCTCGACCTCTTCGCCACCGATCCGgtccttcctc ... tgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctccatgtgctttttttaaaacttaccacaccttttttgggttctgttatgcagGTCTCGATTGCAAGAACTTGTAACTGCATCTATGCGCTGCTGCAGCAGCGACAGAGGGACATTGAGTTCAGGGAGTCTACAAATGACCAGCGGCAGCG
                    aacttac  putative branch site (score: 2)
                                          ttctgtt  putative PPT
           tttttttaaaactta  TA-rich tract