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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctggatctctaccccttactctgacgacgccattttctgatttccttcgttacttcatcctcctctctctctctctctctctctctctctctctctctccagtcagcaagcagttcttgtttgtcatgcttttgtaagtgtagttatataatttgtgacactctgctttaaagGAGTTGCTTGCTTTGGGGGAGCGAATTGGTACCGTAAACACAGGTCTTTCAGACGACGCGTTATCCGCGTGCCTGAACAGGAGGCTCTACATGCCCACAG

Basic information

species Zea mays
transcript GRMZM2G053909_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38568931|gb|CF974816.1|CF974816
EST:     ATGATCGGCATAGAGGAATGAGGATGGATATCGACGGCATGTCCTACGAA                         GAGTTGCTTGCTTTGGGGGAGCGAATTGGTACCGTAAACACAGGTCTTTCA
genomic: ATGATCGGCATAGAGGAATGAGGATGGATATCGACGGCATGTCCTACGAAgtatgtctgg ... tgctttaaagGAGTTGCTTGCTTTGGGGGAGCGAATTGGTACCGTAAACACAGGTCTTTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgtcatgcttttgtaagtgtagttatataatttgtgacactctgctttaaagGAGTTGCTTGCTTTGGGGGAGCGAATTGGTACCGTAAACACAGGTCTTTCAGACGACGCGTTATCCGCGTGCCTGAACAGGAGGCTCTACATGCCCACAG
                                          ctctgcttt  CT-rich tract
                    tgtagttatataattt  TA-rich tract