1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgagcgccaatttccctcttgggttcgagttcgagggggtttgattctgatgtcagtggtttgcggcgtggctgcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGGTACCTGAACCAGACGCTCGTCACCTTCGGATTCCCGGCATCTCTCGAC
species | Zea mays |
transcript | GRMZM2G147500_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211122097|gb|FL004251.1|FL004251
genomic: CGGGCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211122868|gb|FL004257.1|FL004257
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211122100|gb|FL004254.1|FL004254
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211124438|gb|FL004293.1|FL004293
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211124442|gb|FL004297.1|FL004297
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|22715261|gb|BU197668.1|BU197668
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCAGCAGTTGCAGCCGCCACCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211124431|gb|FL004286.1|FL004286
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211122872|gb|FL004261.1|FL004261
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211122877|gb|FL004266.1|FL004266
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211123651|gb|FL004271.1|FL004271
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCNAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211124436|gb|FL004291.1|FL004291
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211123653|gb|FL004273.1|FL004273
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211122095|gb|FL004249.1|FL004249
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211122881|gb|FL004270.1|FL004270
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211124441|gb|FL004296.1|FL004296
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211124440|gb|FL004295.1|FL004295
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|26559425|gb|CA831660.1|CA831660
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCAGCAGTTGCAGCCGCCACCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211122880|gb|FL004269.1|FL004269
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211122101|gb|FL004255.1|FL004255
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211123664|gb|FL004284.1|FL004284
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211125213|gb|FL004301.1|FL004301
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211122098|gb|FL004252.1|FL004252
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211124432|gb|FL004287.1|FL004287
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211124434|gb|FL004289.1|FL004289
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211123652|gb|FL004272.1|FL004272
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|148964224|gb|EE015404.2|EE015404
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|22133783|gb|BQ833900.1|BQ833900
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCAGCAGTTGCAGCCGCCACCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|26558350|gb|CA830585.1|CA830585
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCAGCAGTTGCAGCCGCCACCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGEST: gi|211123661|gb|FL004281.1|FL004281
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
EST: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAG CAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
genomic: GCCTCGTCGCATCAGTTGCAGCCGCCGCCGTCGCACGCCAGCATGAGgtgagcgcca ... gcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCG
gttcgagggggtttgattctgatgtcagtggtttgcggcgtggctgcttgtgcagCAGCGACGGGGGCGCGTTCGCAAACGCGGAGAACCTGGAGCACTGCGCCCGGTACCTGAACCAGACGCTCGTCACCTTCGGATTCCCGGCATCTCTCGAC
ttctgat putative branch site (score: 3)
tttgatt TA-rich tract