Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacatggttcatcagtgtcttttattggcagcagaacaaactggctgctttctgattttaactgtcagtttgctaacgtatgtcaagtttacacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA

Basic information

species Zea mays
transcript GRMZM2G120674_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120674_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g57790.1 (Oryza sativa), 3'ss of exon 2
-----gacatggttcatcagtgtcttttattggcagcagaacaaactggctgctttctgattttaactgtcagtttgctaacgtatgtcaagtttacacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA
      |||| | |    |     | |  || |  |    |  |  |     | ||   |||| |  | | |||| |      || || |  ||  |||   ||||||||||||||||||| || |||| |||||||||||| ||||||||||| |||  |||||||||||| || ||||||||||| ||||| |
aaaatcacatcgattgaaatgaagtatgttttgtggtgttattacttatgaacatt---atttcatgtttaagttagtactaataagtgattttgtcac--atagGCACGTTCAAGCTGACACTACAATTTACAGAAGATTATCCCAACAAACCACCAGTTGTTCGGTTTGTCTCAAGGATGTTTCACCCAAATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60357087|gb|DN224060.1|DN224060
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|6012426|gb|AW061863.1|AW061863
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|211149048|gb|FL300334.1|FL300334
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|149106021|gb|EE291669.2|EE291669
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|211149042|gb|FL300328.1|FL300328
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|20802675|gb|BQ293725.1|BQ293725
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|211149040|gb|FL300326.1|FL300326
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|211268543|gb|FL032951.1|FL032951
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|211149047|gb|FL300333.1|FL300333
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|148929954|gb|EE285763.2|EE285763
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|60359324|gb|DN226297.1|DN226297
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|211147600|gb|FL300320.1|FL300320
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|37378572|gb|CF625982.1|CF625982
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|71430726|gb|DR811776.1|DR811776
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|9731376|gb|BE510128.1|BE510128
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|16926752|gb|BM079820.1|BM079820
EST:     GCCGGGTGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|40485810|gb|CK394750.1|CK394750
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|74233323|gb|DT641237.1|DT641237
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|71315558|gb|DR794383.1|DR794383
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|6021288|gb|AW066216.1|AW066216
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|9566167|gb|BE475676.1|BE475676
EST:     GCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|60344768|gb|DN211741.1|DN211741
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|71430725|gb|DR811775.1|DR811775
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|149106022|gb|EE291670.2|EE291670
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|60341249|gb|DN208222.1|DN208222
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|71435217|gb|DR816267.1|DR816267
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|60357084|gb|DN224057.1|DN224057
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|9952861|gb|BE639444.1|BE639444
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|9731385|gb|BE510137.1|BE510137
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGGACAGAAGAATACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|148932939|gb|EE285764.2|EE285764
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|211268544|gb|FL032952.1|FL032952
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|211409222|gb|FL440202.1|FL440202
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|32865559|gb|CF005241.1|CF005241
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|76286530|gb|DV026098.1|DV026098
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|60672663|gb|DN475359.1|DN475359
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|60352412|gb|DN219385.1|DN219385
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|9566172|gb|BE475681.1|BE475681
EST:     CGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: CGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|74233324|gb|DT641238.1|DT641238
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|71756699|gb|DR954636.1|DR954636
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|211534683|gb|FL445701.1|FL445701
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|9461700|gb|BE453861.1|BE453861
EST:     CCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: CCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|60359587|gb|DN226560.1|DN226560
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|60346843|gb|DN213816.1|DN213816
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|113702935|gb|EE680439.1|EE680439
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|211357324|gb|FL465449.1|FL465449
EST:     GCCGGATGACACGCAGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|211266116|gb|FL032945.1|FL032945
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|6952329|gb|AW424397.1|AW424397
EST:     GCCGGATGACACGCC-TGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|149089468|gb|EE178713.2|EE178713
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
EST: gi|60342255|gb|DN209228.1|DN209228
EST:     GCCGGATGACACGCCGTGGGATGGAG                         GCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC
genomic: GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 26 (upstream exon), 45 (downstream exon)
Score: 393

GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA


Block sizes: 26 (upstream exon), 49 (downstream exon)
Score: 632

GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA


Block sizes: 41 (upstream exon), 49 (downstream exon)
Score: 512

GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA


Block sizes: 26 (upstream exon), 49 (downstream exon)
Score: 636

GCCGGATGACACGCCGTGGGATGGAGgtgagaccca ... acacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctttctgattttaactgtcagtttgctaacgtatgtcaagtttacacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA
                         tgctaac  putative branch site (score: 636)
       tgattttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gacatggttcatcagtgtcttttattggcagcagaacaaactggctgctttctgattttaactgtcagtttgctaacgtatgtcaagtttacacttgtagGCACGTTCAAGCTGACTCTGCAATGTACAGAAGATTACCCCAACAAACCTCCAACTGTTCGGTTTGTTTCGAGGATGTTTCATCCAAACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - gttcatc
- - - - - - - - - - - - - -gcagcag
- - - - - - - - - - - - - - - - - aacaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctaa