Skip to another splice site:
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 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggaagtctgaaactaatttgagactaactagaacatgccctcttctcctacatcttttttcacgcaatttcacttgacgtggttgatcgctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAAGTCGGATGGTCAAAGAACCAGCAGGTGGCTAAATCCAACCCCACCCTCG

Basic information

species Zea mays
transcript GRMZM2G106906_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106906_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os12g37060.1 (Oryza sativa), 3'ss of exon 2
-gggaagtctga-aactaatttgagactaactagaacatgccctcttctcctacatcttttttcacgcaatttcacttgacgtggttgatcgctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAAGTCGGATGGTCAAAGAACCAGCAGGTGGCTAAATCCAACCCCACCCTCG
   ||  | ||  ||| |     | || || ||||| || ||||    | ||     | |  |   || |    | |  |  |||||| | | | |||||||||||||||||||||||||||||| ||| |||||||||| || || ||||| || || ||||| |||||    |||||||| |||  |||||| ||||| |
caagacctatggtaaccatgcctaaacaaattagaagatccccttcctttctcttcatctcctagtgcgacgataat--atttggttgtttgatcctcgcagATGATGAAGAAGAGGCACAAGATTGAGAGGGACCTGAGCATTGGTGAGGAGGTTGGGTGGTCGAAGAATGTTCAGGTGGCAAAAAACAACCCTACCCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93016863|gb|EB642383.1|EB642383
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|14243889|gb|BG841658.2|BG841658
EST:     TCGGCTGCAACCTCTCCAACCTTNTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|211252970|gb|FL107085.1|FL107085
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGAC-TGAGTATCGGC
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGC
EST: gi|71323169|gb|DR798252.1|DR798252
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|71298304|gb|DR785130.1|DR785130
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|211260287|gb|FL107126.1|FL107126
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATTAAGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAA
EST: gi|8401294|gb|BE056928.1|BE056928
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCTATTTTTACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|211061481|gb|FL107066.1|FL107066
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGCACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|9731778|gb|BE510530.1|BE510530
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|211257859|gb|FL107119.1|FL107119
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAAGCACAAG
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAG
EST: gi|148996155|gb|EE035425.2|EE035425
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|211061478|gb|FL107063.1|FL107063
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGG
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGG
EST: gi|211061483|gb|FL107068.1|FL107068
EST:     CGGCTGGCACCCTCTCCA-CCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAANGAAGAGGCACA-GATCGAGCGGGACCTGAGTATCGGCGAAGA
genomic: CGGCTG-CAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAA-GAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGA
EST: gi|211260290|gb|FL107129.1|FL107129
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|211260291|gb|FL107130.1|FL107130
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|71305775|gb|DR789026.1|DR789026
EST:     TCGGCTGCAACCTCTCCAACCTTTTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|22472570|gb|BU037050.1|BU037050
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|37386748|gb|CF630563.1|CF630563
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|211058524|gb|FL107057.1|FL107057
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|148980421|gb|EE027132.2|EE027132
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|76923733|gb|DV169631.1|DV169631
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|110531240|gb|EE035424.1|EE035424
EST:     TCGGCTGCAACCTCTCCAACCTTTTAGTTTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|71298305|gb|DR785131.1|DR785131
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|5740092|gb|AI947782.1|AI947782
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCCCAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|71323167|gb|DR798251.1|DR798251
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|76923734|gb|DV169632.1|DV169632
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|211252962|gb|FL107077.1|FL107077
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATYGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGG
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGG
EST: gi|211061479|gb|FL107064.1|FL107064
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCAYCGAG                         ATGATGAAGAAGAGGC
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGC
EST: gi|9731779|gb|BE510531.1|BE510531
EST:     CCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: CCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|211255408|gb|FL107097.1|FL107097
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAG
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAG
EST: gi|211252971|gb|FL107086.1|FL107086
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|32848112|gb|CD987793.1|CD987793
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|211058519|gb|FL107052.1|FL107052
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCAY-GAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGAC-TGAGTA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTA
EST: gi|148966841|gb|EE017947.2|EE017947
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|101382833|gb|EB813471.1|EB813471
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|149105321|gb|EE290815.2|EE290815
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|211061477|gb|FL107062.1|FL107062
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         AAGGATGAAGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATG-ATGAAGAA
EST: gi|67021705|gb|CO450454.1|CO450454
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|113703253|gb|EE680757.1|EE680757
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|7162426|gb|AW520048.1|AW520048
EST:     TCGGCTGCAACCTCTCCAACCTTNTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGGGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|71430045|gb|DR811095.1|DR811095
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|71774158|gb|DR972038.1|DR972038
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|74233476|gb|DT641390.1|DT641390
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|71305777|gb|DR789027.1|DR789027
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|74244490|gb|DT652404.1|DT652404
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|74233477|gb|DT641391.1|DT641391
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|211167527|gb|FL479825.1|FL479825
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|78107555|gb|DV525973.1|DV525973
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAA                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|211061482|gb|FL107067.1|FL107067
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTSACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGG
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGG
EST: gi|211061488|gb|FL107073.1|FL107073
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATYGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGAC-TGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|76011236|gb|DT938406.1|DT938406
EST:     TCGGCTGCAACCTCTCCAACCTTTTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|60345536|gb|DN212509.1|DN212509
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|71448162|gb|DR829212.1|DR829212
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|149083802|gb|EE173172.2|EE173172
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|71430044|gb|DR811094.1|DR811094
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|211252965|gb|FL107080.1|FL107080
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCA
EST: gi|28909839|gb|CB331125.1|CB331125
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAA
EST: gi|211260285|gb|FL107124.1|FL107124
EST:     CGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCAYCCGAG                         ATGATGAAGAAGAGGCCCAAGATCGAGCGGGACCTGAGTATCGGCG
genomic: CGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATC-GAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCG
EST: gi|211255407|gb|FL107096.1|FL107096
EST:     TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAG                         ATGATTGA-GAAGAGGCACAAGATCG
genomic: TCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGAT-GAAGAAGAGGCACAAGATCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 199

GACGGCGTCCACTGTGCAGCGCTACCAGCTTGGATTCCTCCTCTCAGCGCTCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAAGTCGGATGGTCAAAGAACCAGCAGGTGGCTAAATCCAACCCCACCCTCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 324

GACGGCGTCCACTGTGCAGCGCTACCAGCTTGGATTCCTCCTCTCAGCGCTCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAAGTCGGATGGTCAAAGAACCAGCAGGTGGCTAAATCCAACCCCACCCTCG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 435

GACGGCGTCCACTGTGCAGCGCTACCAGCTTGGATTCCTCCTCTCAGCGCTCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAAGTCGGATGGTCAAAGAACCAGCAGGTGGCTAAATCCAACCCCACCCTCG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 391

GACGGCGTCCACTGTGCAGCGCTACCAGCTTGGATTCCTCCTCTCAGCGCTCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGgtgaacgtat ... ctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAAGTCGGATGGTCAAAGAACCAGCAGGTGGCTAAATCCAACCCCACCCTCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcctacatcttttttcacgcaatttcacttgacgtggttgatcgctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAAGTCGGATGGTCAAAGAACCAGCAGGTGGCTAAATCCAACCCCACCCTCG
       atctttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gggaagtctgaaactaatttgagactaactagaacatgccctcttctcctacatcttttttcacgcaatttcacttgacgtggttgatcgctgctcgcagATGATGAAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAAGTCGGATGGTCAAAGAACCAGCAGGTGGCTAAATCCAACCCCACCCTCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC
- - - - - aaactaa
- - - - - - - - - - - - - - - - -acatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggttg