1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaattaggaattgtaatcttgaactaatggcagtttgccaaggtgaatcgaggtgattttcacaatgccccacagataaagtatttttttataactgtcgcaatcttttgttgcagGTATTGCATAATCCTGTTTGGCTTGTAGCTGCTGGAGAAGAAAGTGAGGAGGTTGCCTTGCAGAATGATAGAATATTTGGAGCACTTGAGGCTATATATC
species | Zea mays |
transcript | GRMZM2G028492_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAATTGACATATCCCAAATCCATGTTATTAGGTGGAGATGCCCACCACAG GTATTGCATAATCCTGTTTGGCTTGTAGCTGCTGGAGAAGAAAGEST: gi|211462108|gb|FK976051.1|FK976051
genomic: AAATTGACATATCCCAAATCCATGTTATTAGGTGGAGATGCCCACCAAAGgtaattagga ... tttgttgcagGTATTGCATAATCCTGTTTGGCTTGTAGCTGCTGGAGAAGAAAG
EST: AAATTGACATATCCCAAATCCATGTTATTAGGTGGAGATGCCCACCACAG GTATTGCATAATCCTGTTTGGCTTGTAGCTGCTGGAGAAGAAAGTGAGGAGEST: gi|86467534|gb|DY233904.1|DY233904
genomic: AAATTGACATATCCCAAATCCATGTTATTAGGTGGAGATGCCCACCAAAGgtaattagga ... tttgttgcagGTATTGCATAATCCTGTTTGGCTTGTAGCTGCTGGAGAAGAAAGTGAGGAG
EST: AAATTGACATATCCCAAATCCATGTTATTAGGTGGAGATGCCCACCAAAG GTATTGCATAATCCTGTTTGGCTTGTACCTGCTGGAGAAGAAAGTGAGGAGEST: gi|211462110|gb|FK976053.1|FK976053
genomic: AAATTGACATATCCCAAATCCATGTTATTAGGTGGAGATGCCCACCAAAGgtaattagga ... tttgttgcagGTATTGCATAATCCTGTTTGGCTTGTAGCTGCTGGAGAAGAAAGTGAGGAG
EST: AAATTGACATATCCCAAATCCATGTTATTAGGTGGAGATGCCCACCACAG GTATTGCATAATCCTGTTTGGCEST: gi|71324055|gb|DR798716.1|DR798716
genomic: AAATTGACATATCCCAAATCCATGTTATTAGGTGGAGATGCCCACCAAAGgtaattagga ... tttgttgcagGTATTGCATAATCCTGTTTGGC
EST: AAATTGACATATCCCAAATCCATGTTATTAGGTGGAGATGCCCACCAAAG GTATTGCATAATCCTGTTTGGCTTGTAGCTGCTGGAGAAGAAAGTGAGGAGEST: gi|71422392|gb|DR805714.1|DR805714
genomic: AAATTGACATATCCCAAATCCATGTTATTAGGTGGAGATGCCCACCAAAGgtaattagga ... tttgttgcagGTATTGCATAATCCTGTTTGGCTTGTAGCTGCTGGAGAAGAAAGTGAGGAG
EST: AAATTGACATATCCCAAATCCATGTTATTAGGTGGAGATGCCCACCAAAG GTATTGCATAATCCTGTTTGGCTTGTAGCTGCTGGAGAAGAAAGTGAGGAG
genomic: AAATTGACATATCCCAAATCCATGTTATTAGGTGGAGATGCCCACCAAAGgtaattagga ... tttgttgcagGTATTGCATAATCCTGTTTGGCTTGTAGCTGCTGGAGAAGAAAGTGAGGAG
acaatgccccacagataaagtatttttttataactgtcgcaatcttttgttgcagGTATTGCATAATCCTGTTTGGCTTGTAGCTGCTGGAGAAGAAAGTGAGGAGGTTGCCTTGCAGAATGATAGAATATTTGGAGCACTTGAGGCTATATATC
ttataac putative branch site (score: 49)
tcttttgtt putative PPT
acagataaagtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattaggaattgtaatcttgaactaatggcagtttgccaaggtgaatcgaggtgattttcacaatgccccacagataaagtatttttttataactgtcgcaatcttttgttgcagGTATTGCATAATCCTGTTTGGCTTGTAGCTGCTGGAGAAGAAAGTGAGGAGGTTGCCTTGCAGAATGATAGAATATTTGGAGCACTTGAGGCTATATATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA