Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcctgcttgatggctttgccgcccttcttcctcgtttgtcatactggctttgcatcgagctgaaccgaatcgtggatccgtggtttcctctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAAGCAGAAGTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCG

Basic information

species Zea mays
transcript GRMZM2G010599_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010599_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g30730.1 (Oryza sativa), 3'ss of exon 2
gtgcctgcttgatggctttgccgcccttcttcctcgtttgtcatactggctttgcatcgagctgaaccgaatcgtggatccgtggtttcctctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAAGCAGAAGTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCG
  |   || |  |  ||   ||  |  |||  |||||||||     |||||  | |||  ||| | | |  || |||    |||  ||  | | | |||||||| | ||||||||||| ||||| |||||||| || || |||||||||||||||||| |||||||| | |||||||||||||||||||  || ||||||
--gtgcgcctccttcct---ccttctctctcgctcgtttgttggtgtggct--ggatctcgctca-cgggttcttggggtggtgaattttttt-tcgcagCAAGGTGGTGCGCACCTCGATCGCGCGCGTGCTGACGGTGATCTCGCAGAAGCAGAAGGCGGCGCTGAGGGAGGCGTACAAGAAGAAGAGCCTGCTCCCG

upper sequence: GRMZM2G010599_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g30050.1 (Oryza sativa), 3'ss of exon 2
gtgcctgcttgatggctttgccgcccttcttcctcgtttgtcatactggctttgcatcgagctgaaccgaatcgtggatccgtggtttcctctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAAGCAGAAGTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCG
|| |  ||||   |     ||   |  || | |||  |  || | |||  |   | | | | |  |  |||||     || |||||||       ||||||||| | |||||||| || ||||| || ||||| || || |||||||||||||||| | ||||||||||||||||||||||||||||||  || ||||| 
gtacgcgcttcgcgctcgcgctcgcgctcattctc--tcctctttctgtgtgccc-ttgtgattgattgaatc-----tctgtggttt-------tgcagCAAGGTGGTGCGCACGTCGATCGCGCGGGTGCTGACGGTGATCTCGCAGAAGCAGAGGGCGGCGCTGCGTGAGGCGTACAAGAAGAAGAGCCTCCTCCCC

upper sequence: GRMZM2G010599_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA13G19650.1 (Glycine max), 3'ss of exon 1
-----------------gtgcctgcttgatggctttgccgcccttcttcctcgt-ttgtcatactggctttgcatc----gagctgaaccgaatcgtggatccgtggtttcctctctt--gcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAAGCAGAAGTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCG
                      | ||   ||  ||    | |||  ||  |  | ||   || | ||  | || |     || |  |||  ||  | |  |   | ||||  | | ||  |||| ||| | ||| |    || || || |  ||  | || || || || |||||||||||  |||||||| | ||||| |||||||||||||||  | | || 
gtaccaactcacttccaacattttctcagtg-tttgtttgtcctgattattattattagtatgcgggaatcgcgttttgtgaacgaaacgaaacggcgttttaattgtttttttttttttgcagTAAGGTGGTGAGGCTATCGATAGCGCAGGTTTTGACGGTTATTTCCCAGAAGCAGAAAGCGGCGCTGAGAGAGGCTTACAAGAAGAAGAAGTATTTGCCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211330996|gb|FK988213.1|FK988213
EST:     CTACGCATCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|211333162|gb|FK988229.1|FK988229
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAGCAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|211328832|gb|FK988196.1|FK988196
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|211023597|gb|FL217585.1|FL217585
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|211330993|gb|FK988210.1|FK988210
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATTGTGCGCACCTCCATCGCTCGCGTGCTCACCGTTATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|30704600|gb|CD058563.1|CD058563
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|211250381|gb|FL431483.1|FL431483
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|211330984|gb|FK988201.1|FK988201
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATTGTGCGCACCTCCATCGCTCGCGTGCTCACCGTTATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|211335320|gb|FK988232.1|FK988232
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGAGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|4730667|gb|AI649833.1|AI649833
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCNCCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|211328835|gb|FK988199.1|FK988199
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|67020323|gb|CO449072.1|CO449072
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|211328828|gb|FK988192.1|FK988192
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|60400231|gb|DN233038.1|DN233038
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         ----ATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|18176750|gb|BM351683.1|BM351683
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|67023906|gb|CO452655.1|CO452655
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|37379912|gb|CF626727.1|CF626727
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|18166672|gb|BM336511.1|BM336511
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|30704590|gb|CD058562.1|CD058562
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|89755381|gb|DY685822.1|DY685822
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|211333150|gb|FK988217.1|FK988217
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|67022317|gb|CO451066.1|CO451066
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|211333156|gb|FK988223.1|FK988223
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATTGTGCGCACCTCCATCGCTCGCGTGCTCACCGTTATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|211333161|gb|FK988228.1|FK988228
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATTGTGCGCACCTCCATCGCTCGCGTGCTCACCGTTATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|211333157|gb|FK988224.1|FK988224
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|67023749|gb|CO452498.1|CO452498
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|211328833|gb|FK988197.1|FK988197
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|211330991|gb|FK988208.1|FK988208
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|32930463|gb|CF035275.1|CF035275
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATTGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|29544648|gb|CB605028.1|CB605028
EST:     CTACGCGTCGCC-AGGTCACCGGCGGGGCTCCCAACAAGCTCTCC-AAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|211330990|gb|FK988207.1|FK988207
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|30307036|gb|CD001709.1|CD001709
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|30306407|gb|CD001080.1|CD001080
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|15199222|gb|BI423722.1|BI423722
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|211335323|gb|FK988235.1|FK988235
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
EST: gi|211254801|gb|FL420516.1|FL420516
EST:     CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAAT                         CAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA
genomic: CTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 510

AGACGGATCTGCAAGCGCAGCTCAAGGAGCTTAAATCGGAGCTCTCCCTCCTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAAGCAGAAGTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCG


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 200

AGACGGATCTGCAAGCGCAGCTCAAGGAGCTTAAATCGGAGCTCTCCCTCCTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAAGCAGAAGTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCG


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 125

AGACGGATCTGCAAGCGCAGCTCAAGGAGCTTAAATCGGAGCTCTCCCTCCTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAAGCAGAAGTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 303

AGACGGATCTGCAAGCGCAGCTCAAGGAGCTTAAATCGGAGCTCTCCCTCCTACGCGTCGCCAAGGTCACCGGCGGGGCTCCCAACAAGCTCTCCAAAATgtgcctgctt ... tctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAAGCAGAAGTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggctttgcatcgagctgaaccgaatcgtggatccgtggtttcctctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAAGCAGAAGTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCG
                                        tttcctctcttgc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcctgcttgatggctttgccgcccttcttcctcgtttgtcatactggctttgcatcgagctgaaccgaatcgtggatccgtggtttcctctcttgcagCAAGATCGTGCGCACCTCCATCGCTCGCGTGCTCACCGTCATCTCGCAGAAGCAGAAGTCGGCGCTGCGTGAGGCGTACAAGAAGAAGAAGCTTCTCCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC