1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgatccctgctcgccccaaccatttccctgaacatccagtctccaagactccaacaaaacggggcagagtcaccctgctgaagaattggattttccgattactattttgctaacatgacgagttaattgtctcagAGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCGGGGATGGTGGGCGGCATGCTGCTTCACCTGCGCTCGCTCCGCCGCTTCG
species | Zea mays |
transcript | AC233960.1_FGT002 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAG AGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCGEST: gi|149099036|gb|EE185054.2|EE185054
genomic: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAGgtgatccctg ... attgtctcagAGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCG
EST: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAG AGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCGEST: gi|71422715|gb|DR805803.1|DR805803
genomic: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAGgtgatccctg ... attgtctcagAGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCG
EST: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAG AGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCGEST: gi|71764916|gb|DR962853.1|DR962853
genomic: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAGgtgatccctg ... attgtctcagAGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCG
EST: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAG AGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCGEST: gi|149095769|gb|EE181412.2|EE181412
genomic: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAGgtgatccctg ... attgtctcagAGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCG
EST: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAG AGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCGEST: gi|148937945|gb|EC882176.2|EC882176
genomic: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAGgtgatccctg ... attgtctcagAGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCG
EST: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAG AGGAGGTACGGCTGCCGTGCTATGATGEST: gi|149096470|gb|EE182212.2|EE182212
genomic: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAGgtgatccctg ... attgtctcagAGGAGGTACGGCTGCCGTGCTATGATG
EST: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAG AGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCGEST: gi|89249421|gb|DY621207.1|DY621207
genomic: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAGgtgatccctg ... attgtctcagAGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCG
EST: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAG AGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCGEST: gi|76015230|gb|DT942400.1|DT942400
genomic: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAGgtgatccctg ... attgtctcagAGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCG
EST: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAG AGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCGEST: gi|76017432|gb|DT944602.1|DT944602
genomic: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAGgtgatccctg ... attgtctcagAGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCG
EST: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAG AGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCGEST: gi|78107664|gb|DV526082.1|DV526082
genomic: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAGgtgatccctg ... attgtctcagAGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCG
EST: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAG AGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCGEST: gi|149078562|gb|EE167345.2|EE167345
genomic: CCTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTCTTCCAGgtgatccctg ... attgtctcagAGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCG
EST: CTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATTTCTTCCAA AGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGC
genomic: CTATTGGACCGTCAAATTACTGCGCGTGCCCACCGACATATT-CTTCCAGgtgatccctg ... attgtctcagAGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGC
aagaattggattttccgattactattttgctaacatgacgagttaattgtctcagAGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCGGGGATGGTGGGCGGCATGCTGCTTCACCTGCGCTCGCTCCGCCGCTTCG
ttgtctc CT-rich tract
attactatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatccctgctcgccccaaccatttccctgaacatccagtctccaagactccaacaaaacggggcagagtcaccctgctgaagaattggattttccgattactattttgctaacatgacgagttaattgtctcagAGGAGGTACGGCTGCCGTGCTATGATGCTGGAAACAGTGGCGGCGGTGCCGGGGATGGTGGGCGGCATGCTGCTTCACCTGCGCTCGCTCCGCCGCTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT