1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgcatgcatgccgcaccgcagaacgggctctggatgcaatgagtctgctatttgactgcgaaatttgttcagGCCAAGGACCTGGACGACCTCAAGGCCTGGAAGTCGACCGTCTCCGGCAAGCTGGACGATCTGATCAAGGAGAACCAGGAGATGAG
species | Zea mays |
transcript | AC194341.4_FGT003 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGGACAGGGTG GCCAAGGACCTGGACGACCTCAGGGCCTGGAAGTCGACCGTCTCCGGCAAGEST: gi|211251144|gb|FL466743.1|FL466743
genomic: AAGGACAGCGTGgtatgcatgc ... atttgttcagGCCAAGGACCTGGACGACCTCAAGGCCTGGAAGTCGACCGTCTCCGGCAAG
EST: ARAARATGAAGGCCGACGTGCACGATCTCGTTGACGGGAAGGACAGCGTG GCCAAGGACCTGGACGACCTCAAGGCCTGGAAGTCGACCGTCTCCGGCAAGEST: gi|211251146|gb|FL466745.1|FL466745
genomic: AGAAGATGAAGGCCGACGTGCACGACCTCGTCGACGGGAAGGACAGCGTGgtatgcatgc ... atttgttcagGCCAAGGACCTGGACGACCTCAAGGCCTGGAAGTCGACCGTCTCCGGCAAG
EST: AGAAGATGAAGGCCGACGTGCACGATCTCGTTGACGGGAAGGACAGCGTG GCCAAGGACCTGGACGACCTCAAGGCCTGGAAGTCGACCGTCTCCGGCAAGEST: gi|71317282|gb|DR795325.1|DR795325
genomic: AGAAGATGAAGGCCGACGTGCACGACCTCGTCGACGGGAAGGACAGCGTGgtatgcatgc ... atttgttcagGCCAAGGACCTGGACGACCTCAAGGCCTGGAAGTCGACCGTCTCCGGCAAG
EST: AGAAGATGAAGGCCGACGTGCACGACCTCGTCGACGGGAAGGACAGCGTG GCCAAGGACCTGGACGACCTCAAGGCCTGGAAGTCGACCGTCTCCGGCAAG
genomic: AGAAGATGAAGGCCGACGTGCACGACCTCGTCGACGGGAAGGACAGCGTGgtatgcatgc ... atttgttcagGCCAAGGACCTGGACGACCTCAAGGCCTGGAAGTCGACCGTCTCCGGCAAG
gcagaacgggctctggatgcaatgagtctgctatttgactgcgaaatttgttcagGCCAAGGACCTGGACGACCTCAAGGCCTGGAAGTCGACCGTCTCCGGCAAGCTGGACGATCTGATCAAGGAGAACCAGGAGATGAG
atttgac putative branch site (score: 35)
tttgttc putative PPT
aaatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcatgcatgccgcaccgcagaacgggctctggatgcaatgagtctgctatttgactgcgaaatttgttcagGCCAAGGACCTGGACGACCTCAAGGCCTGGAAGTCGACCGTCTCCGGCAAGCTGGACGATCTGATCAAGGAGAACCAGGAGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG