1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...atgtattacttatagcaactcgcccaactcttcagttttgtaacttctaaaccttagagaaactagaccaaactgtcttatgtattgacaatattttcagATTATAATTGCGTTCAGCATAGTTGATCACATAAAGAAATTGTTTTATTCTGGGGAAGGGGCTGATTCAAG
species | Zea mays |
transcript | GRMZM2G030235_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CAGATCCACGTAAATCCCTTGAAGAGGAATATCTAGAAACAGAAAAGAAG ATTATAATTGCGTTCAGCATAGTTGATCACATAAAGAAATTGTTTTATTCTEST: gi|32802267|gb|CD954503.1|CD954503
genomic: CAGATCCACGTAAATCCCTTGAAGAGGAATATCTAGAAACAGAAAAGAAGgttatactca ... atattttcagATTATAATTGCGTTCAGCATAGTTGATCACATAAAGAAATTGTTTTATTCT
EST: GATCCACGTAAATCCCTTGAAGAGGAATATCTAGAAACAGAAAAGAAG ATTATAATTGCGTTCAGCATAGTTGATCACATAAAGAAATTGTTTTATTCT
genomic: GATCCACGTAAATCCCTTGAAGAGGAATATCTAGAAACAGAAAAGAAGgttatactca ... atattttcagATTATAATTGCGTTCAGCATAGTTGATCACATAAAGAAATTGTTTTATTCT
tctaaaccttagagaaactagaccaaactgtcttatgtattgacaatattttcagATTATAATTGCGTTCAGCATAGTTGATCACATAAAGAAATTGTTTTATTCTGGGGAAGGGGCTGATTCAAG
tattgac putative branch site (score: 2)
tattttc putative PPT
tattgacaatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtattacttatagcaactcgcccaactcttcagttttgtaacttctaaaccttagagaaactagaccaaactgtcttatgtattgacaatattttcagATTATAATTGCGTTCAGCATAGTTGATCACATAAAGAAATTGTTTTATTCTGGGGAAGGGGCTGATTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT