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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgactttttttttctgtatggttctgtggttatttcattatttattacttctcttttgttgaacagttccactacttgagctactctggataaacttgtgctcaccttgttttacatttgtaatatgttggccttctcagTGATGAGCTGGAGAAATGTGTGAGTGATTTTCTAAAGTTGACAAAACATCATCTTTCAGCATTCAAG

Basic information

species Zea mays
transcript GRMZM2G030235_T01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030235_T05 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os05g06980.1 (Oryza sativa), 3'ss of exon 13
----gtatgacttt--ttttttctgtatggttctgtggttattt-cattatttattacttctcttttgttgaacagt---------tccactacttgagctactctggataaactt--gtgctcacct-tgttttacatttgtaatatgt--tggccttctcagTGATGAGCTGGAGAAATGTGTGAGTGATTTTCTAAAGTTGACAAAACATCATCTTTCAGCATTCAAG
     || |        | |  || ||  || || || ||  ||   |||||| |   ||  |||   ||  | ||           |  ||||   | | | ||| | | |||||  ||||| |||| | || | | |||||||| |||  || |||||||||||||||| |||||| ||||||||||  |||||| |||||||| |||||||| |||||||  ||||||
gtacttacgctcgcaactgtggctatacagtcctctgattgcttattttatttgtagttttccttccatttgaaagaggctagagaactgctacactatccaatctag-tgaacttaggtgctgacctgttttatccttttgtaatttgtcgtgaccttctcagTGATGAGTTGGAGAGATGTGTGAGTAGTTTTCTGAAGTTGACCAAACATCACCTTTCAGTCTTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggataaacttgtgctcaccttgttttacatttgtaatatgttggccttctcagTGATGAGCTGGAGAAATGTGTGAGTGATTTTCTAAAGTTGACAAAACATCATCTTTCAGCATTCAAG
             tgctcac  putative branch site (score: 2)
                                              ccttctc  putative PPT
                        ttttacatttgtaata  TA-rich tract