1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaggagccactggattgagactataagcatcgtacaattgctatttctcccatacacacttgttttcattacatgatgataattatttctgatgacaaccagGCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCTGAGGCAACTGACCGGGAGCTTGAGCTTGAAGCTCAACTGGTTGAAGCAA
species | Zea mays |
transcript | GRMZM2G147500_T04 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCAGAGATCAGATAGAAGAGAGTTTGCGCACAAAAATGACTTCAATCAAG GCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCTEST: gi|32943705|gb|CF048524.1|CF048524
genomic: CCAGAGATCAGATAGAAGAGAGTTTGCGCACAAAAATGACTTCAATCAAGgtaggagcca ... tgacaaccagGCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCT
EST: CCAGAGATCAGATAGAAGAGAGTTTGCGCACAAAAATGACTTCAATCAAG GCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCTEST: gi|71427991|gb|DR809041.1|DR809041
genomic: CCAGAGATCAGATAGAAGAGAGTTTGCGCACAAAAATGACTTCAATCAAGgtaggagcca ... tgacaaccagGCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCT
EST: CCAGAGATCAGATAGAAGAGAGTTTGCGCACAAAAATGACTTCAATCAAG GCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCTEST: gi|211407819|gb|FL480459.1|FL480459
genomic: CCAGAGATCAGATAGAAGAGAGTTTGCGCACAAAAATGACTTCAATCAAGgtaggagcca ... tgacaaccagGCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCT
EST: AAATGACTTCAATCAAG GCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCTEST: gi|211359663|gb|FL110322.1|FL110322
genomic: AAATGACTTCAATCAAGgtaggagcca ... tgacaaccagGCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCT
EST: CCAGAGATCAGATAGAAGAGAGTTTGCGCACAAAAATGACTTCAATCAAG GCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCTEST: gi|60350197|gb|DN217170.1|DN217170
genomic: CCAGAGATCAGATAGAAGAGAGTTTGCGCACAAAAATGACTTCAATCAAGgtaggagcca ... tgacaaccagGCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCT
EST: CCAGAGATCAGATAGAAGAGAGTTTGCGCACAAAAATGACTTCAATCAAG GCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCTEST: gi|149096859|gb|EE182653.2|EE182653
genomic: CCAGAGATCAGATAGAAGAGAGTTTGCGCACAAAAATGACTTCAATCAAGgtaggagcca ... tgacaaccagGCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCT
EST: CCAGAGATCAGATAGAAGAGAGTTTGCGCACAAAAATGACTTCAATCAAG GCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCTEST: gi|31405728|gb|CD484460.1|CD484460
genomic: CCAGAGATCAGATAGAAGAGAGTTTGCGCACAAAAATGACTTCAATCAAGgtaggagcca ... tgacaaccagGCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCT
EST: CCAGAGATCAGATAGAAGAGAGTTTGCGCACAAAAATGACTTCAATCAAG GCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCTEST: gi|32911044|gb|CF015856.1|CF015856
genomic: CCAGAGATCAGATAGAAGAGAGTTTGCGCACAAAAATGACTTCAATCAAGgtaggagcca ... tgacaaccagGCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCT
EST: GACTTCAATCAAG GCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCT
genomic: GACTTCAATCAAGgtaggagcca ... tgacaaccagGCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCT
tcccatacacacttgttttcattacatgatgataattatttctgatgacaaccagGCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCTGAGGCAACTGACCGGGAGCTTGAGCTTGAAGCTCAACTGGTTGAAGCAA
ttctgat putative branch site (score: 3)
attacatgatgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggagccactggattgagactataagcatcgtacaattgctatttctcccatacacacttgttttcattacatgatgataattatttctgatgacaaccagGCACGAATGACACAACTTCAAGATGCTCAGAAAGGTGCAGAAGTGACTTCTGAGGCAACTGACCGGGAGCTTGAGCTTGAAGCTCAACTGGTTGAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA