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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagttaccaactttttttttgcaaatctaggttacatatctttatgattttcatcattatactagcgactgtcatgtctaattatgtcttcggtctgcagAGTATCACCAATGGGTATGATCTTCATTCCCTGTTACAAAG

Basic information

species Zea mays
transcript GRMZM2G130034_T02
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130034_T02 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os12g40550.1 (Oryza sativa), 3'ss of exon 10
---------------------------------------------------gagttaccaactttttttttgcaa-atctaggttacatatctttatgattttcat------cattatact-agcgactgtcatgtctaattatgtcttcggtctgcagAGTATCACCAATGGGTATGATCTTCATTCCCTGTTACAAAG
                                                     | |  |||  | |          || |   ||   | |  ||||| | ||  |       |  ||  | | | |||  || ||  || |   |||| | |||||||| |||||||||||||||||||||||||||| ||||||||||
gtcaagtactataggccccaacagggttttccacctacaaaccaaataccctggctggcaatctctgaaacatgttatttgctttgtgtctaattatgttctttttgtggggtaacatgtttaccaactaacacgtacaactgcttctttgttctgcagAATATCACCAATGGGTATGATCTTCATTCCATGTTACAAAG

upper sequence: GRMZM2G130034_T02 (Zea mays), 3'ss of exon 11
lower sequence: Vv05s0020g04900.t01 (Vitis vinifera), 3'ss of exon 10
----gagttaccaactttttttttgcaaatctaggttacatatctttatgattttcatcattatactagcgactgtcatgtctaattatgtcttcggtct-gcagAGTATCACCAATGGGTATGATCTTCATTCCCTGTTACAAAG
      ||    ||  |||    ||  | |  |  |    |    ||  | ||||| | | |  |  |    |||     |||  | ||||| |    || ||||| |||| |||||||||||||| |||||||| ||||||||||
aatgtggtcttaaagatttcagatggtactgaaaatagtttgctctt--ggttttcttaactgca--aatagctgctg-atcttgtaatgtcatattccttgcagAATATCTCCAATGGGTATGATATTCATTCCATGTTACAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattttcatcattatactagcgactgtcatgtctaattatgtcttcggtctgcagAGTATCACCAATGGGTATGATCTTCATTCCCTGTTACAAAG
                              gtctaat  putative branch site (score: 3)
                                       tgtcttc  putative PPT
       atcattata  TA-rich tract