1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaacactctgttaattttactgaaaacattatatctcagttatccatttaaatgacctgatagcattttgaagagattgatttgggttacatttgtacagAATTGGTCAAGCAGTTGGCTCTCTCCTGAGGCGATTAGGAATTTCATACCAGGGGGAGGAATCTCATGGGAGGATGAGGATCAATGGCCTCACGATAAGG
species | Zea mays |
transcript | GRMZM2G018929_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AAACAAGTTGACATTGATGAAAAGGGGAAAACACTTAAACTTGCTGGAAG AATTGGTCAAGCAGTTGGCTCTCTCCTGAGGCGATTAGGAATTTCATACCAEST: gi|60338982|gb|DN205955.1|DN205955
genomic: AAACAAGTTGACATTGATGAAAAGGAGAAAACACTTAAACTTGCTGGAAGgtgaaatcat ... atttgtacagAATTGGTCAAGCAGTTGGCTCTCTCCTGAGGCGATTAGGAATTTCATACCA
EST: AAACAAGTTGACATTGATGAAAAGGAGAAAACACTTAAACTTGCTGGAAG AATTGGTCAAGCAGTTGGCTCTCTCCTGAGGCGATTAGGAATTTCATACCAEST: gi|67025364|gb|CO454113.1|CO454113
genomic: AAACAAGTTGACATTGATGAAAAGGAGAAAACACTTAAACTTGCTGGAAGgtgaaatcat ... atttgtacagAATTGGTCAAGCAGTTGGCTCTCTCCTGAGGCGATTAGGAATTTCATACCA
EST: AAACAAGTTGACATTGATGAAAAGGAGAAAACACTTAAACTTGCTGGAAG AATTGGTCAAGCAGTTGGCTCTCTCCTGAGGCGATTAGGAATTTCATACCAEST: gi|71316418|gb|DR794888.1|DR794888
genomic: AAACAAGTTGACATTGATGAAAAGGAGAAAACACTTAAACTTGCTGGAAGgtgaaatcat ... atttgtacagAATTGGTCAAGCAGTTGGCTCTCTCCTGAGGCGATTAGGAATTTCATACCA
EST: AAACAAGTTGACATTGATGAAAAGGAGAAAACACTTAAACTTGCTGGAAG AATTGGTCAAGCAGTTGGCTCTCTCCTGAGGCGATTAGGAATTTCATACCA
genomic: AAACAAGTTGACATTGATGAAAAGGAGAAAACACTTAAACTTGCTGGAAGgtgaaatcat ... atttgtacagAATTGGTCAAGCAGTTGGCTCTCTCCTGAGGCGATTAGGAATTTCATACCA
atttaaatgacctgatagcattttgaagagattgatttgggttacatttgtacagAATTGGTCAAGCAGTTGGCTCTCTCCTGAGGCGATTAGGAATTTCATACCAGGGGGAGGAATCTCATGGGAGGATGAGGATCAATGGCCTCACGATAAGG
gattgat putative branch site (score: 25)
attttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacactctgttaattttactgaaaacattatatctcagttatccatttaaatgacctgatagcattttgaagagattgatttgggttacatttgtacagAATTGGTCAAGCAGTTGGCTCTCTCCTGAGGCGATTAGGAATTTCATACCAGGGGGAGGAATCTCATGGGAGGATGAGGATCAATGGCCTCACGATAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
aaacact
- - - - - - - -tttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - tgacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg