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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagttttgtgcttgtaaaaatctttatttttagcttcagagtaccatgtgcgaattatactaaaaatagtttatgttggcacctgtgtatgctcttgcagAACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGGTA

Basic information

species Zea mays
transcript GRMZM2G149994_T05
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149994_T05 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os05g31220.1 (Oryza sativa), 3'ss of exon 5
cagttttgtgcttgtaaaaatctttatttttagcttcagagtaccatgtgcgaattatac-taaaaatagtttatgttggcacctgtgtatgc--tcttgcagAACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGGTA
  ||| | | | | ||  |   |  |||| |     |   |   | || ||   ||  || |   |  |||  |||||   |   | || ||   || | ||||||||| ||  | ||||| ||||||||||||||||| || ||||||||||| || || ||| ||||||| |||||||||||||||||||||||||||   
--gttattttcatatagtagaatcaatttatgaaaactttgcttc-tgcgcatgttccacatctgaccagtgaatgttaatattggagtttgtaatcgttcagAACTGGTCCCAGCGGGAACTCTAGTGGCAATGCCACGGTTGGAGAAAGACTCTTATCAACTCTATTGACGGAAATGGATGGTTTAGAACTGGCTACG---

upper sequence: GRMZM2G149994_T05 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os04g42110.1 (Oryza sativa), 3'ss of exon 9
--cagttttgt--gcttgtaaaaatctttatttttagcttcagagtaccatgtgcgaattatactaaaaatagtttatgttggcacctgtgtatgctcttgcagAACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGGTA
   |||    |    || | ||||  ||  || |  || |   | |   || | |  ||   || |   |  ||| || ||||    |||    | ||    |||||||| ||  | ||||| ||||||||||||||||| || ||||||||||| || || ||| ||||||| |||||||||||||||||||||||||||   
tatagtagaatcaatttatgaaaactttgcttctgcgcatgtaaatctaatttccacatctgaccagtgaatgttaatattggagtttgtaatcgttc----agAACTGGTCCCAGCGGGAACTCTAGTGGCAATGCCACGGTTGGAGAAAGACTCTTATCAACTCTATTGACGGAAATGGATGGTTTAGAACTGGCTACG---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtgcgaattatactaaaaatagtttatgttggcacctgtgtatgctcttgcagAACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACGGTA
            tactaaa  putative branch site (score: 1)
                                            tgctctt  putative PPT
       aattatactaaaaata  TA-rich tract