1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cagttttgtgcttgtaaaaatctttatttttagcttcagagtaccatgtgcgaattatactaaaaatagtttatgttggcacctgtgtatgctcttgcagAACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACG
species | Zea mays |
transcript | GRMZM2G149994_T04 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAG AACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTEST: gi|76015203|gb|DT942373.1|DT942373
genomic: TATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAGgtatgcactg ... gctcttgcagAACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACT
EST: TCTCCCAGCATTATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAG AACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTEST: gi|37391984|gb|CF633237.1|CF633237
genomic: TCTCCCAGCATTATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAGgtatgcactg ... gctcttgcagAACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACT
EST: TCTCCCAGCATTATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAG AACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTEST: gi|211033356|gb|FL442938.1|FL442938
genomic: TCTCCCAGCATTATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAGgtatgcactg ... gctcttgcagAACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACT
EST: ATATNTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAG AACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTEST: gi|67026000|gb|CO454749.1|CO454749
genomic: ATAT-TTTTTGATGAGGCTGATGCCATTGCCCCCAAGAGgtatgcactg ... gctcttgcagAACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACT
EST: TCTCCCAGCATTATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAG AACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTEST: gi|24934696|gb|CA452914.1|CA452914
genomic: TCTCCCAGCATTATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAGgtatgcactg ... gctcttgcagAACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACT
EST: TCTCCCAGCATTATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAG AACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTEST: gi|67018676|gb|CO447425.1|CO447425
genomic: TCTCCCAGCATTATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAGgtatgcactg ... gctcttgcagAACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACT
EST: TCTCCCAGCATTATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAG AACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTEST: gi|24961608|gb|CA483609.1|CA483609
genomic: TCTCCCAGCATTATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAGgtatgcactg ... gctcttgcagAACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACT
EST: TCTCCCAGCATTATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAG AACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTEST: gi|33092600|gb|CF052594.1|CF052594
genomic: TCTCCCAGCATTATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAGgtatgcactg ... gctcttgcagAACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACT
EST: TCTCCCAGCATTATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAG AACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTEST: gi|24773369|gb|CA408623.1|CA408623
genomic: TCTCCCAGCATTATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAGgtatgcactg ... gctcttgcagAACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACT
EST: TCTCCCAGCATTATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAG AACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTEST: gi|24773164|gb|CA408418.1|CA408418
genomic: TCTCCCAGCATTATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAGgtatgcactg ... gctcttgcagAACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACT
EST: TCTCCCAGCATTATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAG AACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACT
genomic: TCTCCCAGCATTATATTTTTTGATGAGGCTGATGCCATTGCCCCCAAGAGgtatgcactg ... gctcttgcagAACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACT
atgtgcgaattatactaaaaatagtttatgttggcacctgtgtatgctcttgcagAACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACG
tactaaa putative branch site (score: 55)
tgctctt putative PPT
aattatactaaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagttttgtgcttgtaaaaatctttatttttagcttcagagtaccatgtgcgaattatactaaaaatagtttatgttggcacctgtgtatgctcttgcagAACTGGCCCTGGTGGGAATTCTAGTGGCAATGCCACAGTCGGAGAAAGACTTTTGTCGACTTTATTGACCGAAATGGATGGTTTAGAACTGGCTACG
- - - - tgcttgt
- - - - - - - - - - - - - - - - gcttcag
- - - - - - - - - - - - - - - - - - - - - - catgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacctg