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...acttcaatcaaaacttagatcatatgcatttatgtaacagtggtcctcgtttttttcttgcagggaagttaatgattttgtatgtttccttgttcttcagGTTCACCTGGAGCTCCTCTACTACCCTTACGCGAAGCATGAAGGGGTTCCTAATCCTTTTGCTAATCAGATTCAACTAACTTCATTGGAGAAGGTTCTCA
species | Zea mays |
transcript | GRMZM2G049347_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ATCTTGTGAAGGACCTGGAAATTCAACGAGACAAGAAACCTCGTGGTCAG GTTCACCTGGAGCTCCTCTACTACCCTTACGCTAAGCATGAAGGGGTTCCTEST: gi|211290677|gb|FL187015.1|FL187015
genomic: ATCTTGTGAAGGACCTGGAAATTCAACGAGACAAGAAACCTCGTGGTCAGgtcagctgat ... tgttcttcagGTTCACCTGGAGCTCCTCTACTACCCTTACGCGAAGCATGAAGGGGTTCCT
EST: ATCTTGTGAAGGACCTGGAAATTCAACGAGACAAGAAACCTCGTGGTCAG GTTCACCTGGAGCTCCTCTACTACCCTTACGCTAAGCATGAAGGGGTTCCTEST: gi|60398772|gb|DN231588.1|DN231588
genomic: ATCTTGTGAAGGACCTGGAAATTCAACGAGACAAGAAACCTCGTGGTCAGgtcagctgat ... tgttcttcagGTTCACCTGGAGCTCCTCTACTACCCTTACGCGAAGCATGAAGGGGTTCCT
EST: GACAAGAAACCTCGTGGTCAG GTTCACCTGGAGCTCCTCTACTACCCTTACGCTAAGCATGAAGGGGTTCCTEST: gi|32794245|gb|CD946481.1|CD946481
genomic: GACAAGAAACCTCGTGGTCAGgtcagctgat ... tgttcttcagGTTCACCTGGAGCTCCTCTACTACCCTTACGCGAAGCATGAAGGGGTTCCT
EST: TCTTGTGAAAGGACCTGGAAATTCAACGAGACAAGAAACCTCGTGGTCAG GTTCACCTGGAGCTCCTCTACTACCCTTACGCTAAGCATGAAGGGGTTCCTEST: gi|211392050|gb|FL249966.1|FL249966
genomic: TCTTGTG-AAGGACCTGGAAATTCAACGAGACAAGAAACCTCGTGGTCAGgtcagctgat ... tgttcttcagGTTCACCTGGAGCTCCTCTACTACCCTTACGCGAAGCATGAAGGGGTTCCT
EST: ATCTTGTGAAGGACCTGGAAATTCAACGAGACAAGAAACCTCGTGGTCAG GTTCACCTGGAGCTCCTCTACTACCCTTACGCTAAGCATGAAGGGGTTCCTEST: gi|32824459|gb|CD964181.1|CD964181
genomic: ATCTTGTGAAGGACCTGGAAATTCAACGAGACAAGAAACCTCGTGGTCAGgtcagctgat ... tgttcttcagGTTCACCTGGAGCTCCTCTACTACCCTTACGCGAAGCATGAAGGGGTTCCT
EST: GTGAAGGACCTGGAAATTCAACGAGACAAGAAACCTCGTGGTCAG GTTCACCTGGAGCTCCTCTACTACCCTTACGCTAAGCATGAAGGGGTTCCTEST: gi|32932662|gb|CF037474.1|CF037474
genomic: GTGAAGGACCTGGAAATTCAACGAGACAAGAAACCTCGTGGTCAGgtcagctgat ... tgttcttcagGTTCACCTGGAGCTCCTCTACTACCCTTACGCGAAGCATGAAGGGGTTCCT
EST: ATCTTGTGAAGGACCTGNAAATTCAACGAGACAAGAAACCTCGTGGTCAG GTTCACCTGGAGCTCCTCTACTACCCTTACGCTAAGCATGAAGGGGTTCCT
genomic: ATCTTGTGAAGGACCTGGAAATTCAACGAGACAAGAAACCTCGTGGTCAGgtcagctgat ... tgttcttcagGTTCACCTGGAGCTCCTCTACTACCCTTACGCGAAGCATGAAGGGGTTCCT
ctcgtttttttcttgcagggaagttaatgattttgtatgtttccttgttcttcagGTTCACCTGGAGCTCCTCTACTACCCTTACGCGAAGCATGAAGGGGTTCCTAATCCTTTTGCTAATCAGATTCAACTAACTTCATTGGAGAAGGTTCTCA
agttaat putative branch site (score: 232)
tgtttccttgttcttc putative PPT
ttaatgattttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttcaatcaaaacttagatcatatgcatttatgtaacagtggtcctcgtttttttcttgcagggaagttaatgattttgtatgtttccttgttcttcagGTTCACCTGGAGCTCCTCTACTACCCTTACGCGAAGCATGAAGGGGTTCCTAATCCTTTTGCTAATCAGATTCAACTAACTTCATTGGAGAAGGTTCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - -aatcaaa
- - - - - - - - - - - -atgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtttc