1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtggatccgcgtgccccatggcttagttagtcgcgcgttttgcgcgtgttgatgtgcggtggctaaatttctgtttctgtttttttttatacagCGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGACAAGGTGATCGTGCACC
species | Zea mays |
transcript | GRMZM5G820727_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAG CGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGAEST: gi|91872665|gb|EB402622.1|EB402622
genomic: GGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAGgtggatccgc ... ttttatacagCGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGA
EST: GGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAG CGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGA
genomic: GGGGCGTTCCCCGAGCACCTCGTCATCATGGTCAATGGCCTCGTCGGGAGgtggatccgc ... ttttatacagCGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGA
ttgcgcgtgttgatgtgcggtggctaaatttctgtttctgtttttttttatacagCGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGACAAGGTGATCGTGCACC
ggctaaa putative branch site (score: 3)
tttctgtttctgtttt CT-rich tract
taaatttctgtttctg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggatccgcgtgccccatggcttagttagtcgcgcgttttgcgcgtgttgatgtgcggtggctaaatttctgtttctgtttttttttatacagCGCGGACGATTGGAAGTTCGCGGCAGAGCAGTTTGTGAGGCGGATGCCGGACAAGGTGATCGTGCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG