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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatacatatatattgttttcaagttttgcaaattgtttagttattcgtgcttgtagtaatttacttccagttttaaattattatttccatctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG

Basic information

species Zea mays
transcript GRMZM2G553379_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101396806|gb|EB820329.1|EB820329
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACCAATATTCCACCGATTCATG                         TATGGACAAAATTC
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTC
EST: gi|211020972|gb|FL097346.1|FL097346
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|76011626|gb|DT938796.1|DT938796
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|9742855|gb|BE519003.1|BE519003
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|50325812|gb|CO520938.1|CO520938
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|76020109|gb|DT947279.1|DT947279
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|211020973|gb|FL097347.1|FL097347
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATT
EST: gi|76909292|gb|DV163313.1|DV163313
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|50324244|gb|CO519370.1|CO519370
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|74238831|gb|DT646745.1|DT646745
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGC
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGC
EST: gi|87157251|gb|DY402040.1|DY402040
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|71440937|gb|DR821987.1|DR821987
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|26559563|gb|CA831798.1|CA831798
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|50329667|gb|CO524793.1|CO524793
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGC
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGC
EST: gi|76932876|gb|DV173214.1|DV173214
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAANAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|149008923|gb|EE041143.2|EE041143
EST:     ATCATCTTCTCCCCCAAAGGGAAGCTCTACGAATATTCCACCGATTCATG                         GATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|71306906|gb|DR789609.1|DR789609
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|78089929|gb|DV518303.1|DV518303
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
EST: gi|37424942|gb|CF650205.1|CF650205
EST:     ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATG                         TATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT
genomic: ATCATCTTCTCCACCAAAGGGAAGCTCTACGAGTATTCCACCGATTCATGgtacgtaccc ... tctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtgcttgtagtaatttacttccagttttaaattattatttccatctttcacagTATGGACAAAATTCTTGACCGGTACGAGCGCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG
                                    ttatttccatctttc  CT-rich tract
            taatttacttccagtt  TA-rich tract