1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaccttccgcgtcctcctcttgctgctcgattggattccaatttttagaccgaccaaactagaattaggtaggttcagcagTTAGATTGGATGCCCTAGCAGCGCCGGCGGCAGATGCTGACCCGGGAGCCGTCGGCGACAAGCTCGTCTTCGAAGCGCCGCCTCAGCCCGTGAGGGAGGA
species | Zea mays |
transcript | GRMZM2G363460_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGCGAGGCCATGGCCTCCGGCATCGGCTCCGGCCAGCAGCAACCCCCAG TTAGATTGGATGCCCTAGCAGCGCCGGCGGCAGATGCTGACCCGGGAGCCGEST: gi|211174721|gb|FL404361.1|FL404361
genomic: AGGCGAGGCCATGGCCTCCGGCATCGGCTCCGGCCAGCAGCAACCCCCAGgtaccttccg ... ggttcagcagTTAGATTGGATGCCCTAGCAGCGCCGGCGGCAGATGCTGACCCGGGAGCCG
EST: AGGCGAGGCCATGGCCTCCGGCATCGGCTCCGGCCAGCAGCAACCCCCAGCAGEST: gi|148947997|gb|EC893497.2|EC893497
genomic: AGGCGAGGCCATGGCCTCCGGCATCGGCTCCGGCCAGCAGCAA-CCCC--CAGgtaccttccg ... ggttcagc
EST: AGGCGAGGCCATGGCCTCCGGCATCGGCTCCGGCCAGCAGCAACCCCCAGGTTCAGCAGEST: gi|67019556|gb|CO448305.1|CO448305
genomic: AGGCGAGGCCATGGCCTCCGGCATCGGCTCCGGCCAGCAGCAA--CCC-----C--CAGgtaccttccg ... gg
EST: AGGCGAGGCCATGGCCTCCGGCATCGGCTCCGGCCAGCAGCAACCCCCAG TTAGATTGGATGCCCTAGCAGCGCCGGCGGCAGATGCTGACCCGGGAGCCGEST: gi|148941345|gb|EC886254.2|EC886254
genomic: AGGCGAGGCCATGGCCTCCGGCATCGGCTCCGGCCAGCAGCAACCCCCAGgtaccttccg ... ggttcagcagTTAGATTGGATGCCCTAGCAGCGCCGGCGGCAGATGCTGACCCGGGAGCCG
EST: AGGCGAGGCCATGGCCTCCGGCATCGGCTCCGGCCAGCAGCAACCCCCAG TTAGATTGGATGCCCTAGCAGCGCCGGCGGCAGATGCTGACCCGGGAGCCGEST: gi|78109256|gb|DV527672.1|DV527672
genomic: AGGCGAGGCCATGGCCTCCGGCATCGGCTCCGGCCAGCAGCAACCCCCAGgtaccttccg ... ggttcagcagTTAGATTGGATGCCCTAGCAGCGCCGGCGGCAGATGCTGACCCGGGAGCCG
EST: AGGCGAGGCCATGGCCTCCGGCATCGGCTCCGGCCAGCAGCAACCCCCAG TTAGATTGGATGCCCTAGCAGCGCCGGCGGCAGATGCTGACCCGGGAGCCGEST: gi|148980471|gb|EE027160.2|EE027160
genomic: AGGCGAGGCCATGGCCTCCGGCATCGGCTCCGGCCAGCAGCAACCCCCAGgtaccttccg ... ggttcagcagTTAGATTGGATGCCCTAGCAGCGCCGGCGGCAGATGCTGACCCGGGAGCCG
EST: AGGCGAGGCCATGGCCTCCGGCATCGGCTCCGGCCAGCAGCAACCCCCAG TTAGATTGGATGCCCTAGCAGCGCCGGCGGCAGATGCTGACCCGGGAGCCGEST: gi|91873988|gb|EB403945.1|EB403945
genomic: AGGCGAGGCCATGGCCTCCGGCATCGGCTCCGGCCAGCAGCAACCCCCAGgtaccttccg ... ggttcagcagTTAGATTGGATGCCCTAGCAGCGCCGGCGGCAGATGCTGACCCGGGAGCCG
EST: AGGCGAGGCCATGGCCTCCGGCATCGGCTCCGGCCAGCAGCAACCCCCAG TTAGATTGGATGCCCTAGCAGCGCCGGCGGCAGATGCTGACCCGGGAGCCG
genomic: AGGCGAGGCCATGGCCTCCGGCATCGGCTCCGGCCAGCAGCAACCCCCAGgtaccttccg ... ggttcagcagTTAGATTGGATGCCCTAGCAGCGCCGGCGGCAGATGCTGACCCGGGAGCCG
tcgattggattccaatttttagaccgaccaaactagaattaggtaggttcagcagTTAGATTGGATGCCCTAGCAGCGCCGGCGGCAGATGCTGACCCGGGAGCCGTCGGCGACAAGCTCGTCTTCGAAGCGCCGCCTCAGCCCGTGAGGGAGGA
aatttttaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccttccgcgtcctcctcttgctgctcgattggattccaatttttagaccgaccaaactagaattaggtaggttcagcagTTAGATTGGATGCCCTAGCAGCGCCGGCGGCAGATGCTGACCCGGGAGCCGTCGGCGACAAGCTCGTCTTCGAAGCGCCGCCTCAGCCCGTGAGGGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA