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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcactggggcacgggcgcacggcacccttcgcgttgcggcgcggtcgtagtgcaggctatggctgtgcattgaggtgttggattctaacggcgcgtgatttttttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGCGTTCTGTACACCGACAAGGATGTGCAGGCTCGAAG

Basic information

species Zea mays
transcript GRMZM2G130034_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130034_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g40550.1 (Oryza sativa), 3'ss of exon 1
gtgcgcactggggcacgggcgcacggcacccttcgcgttgcggcgcggtcgtagtgcaggctatggctgtgcattgaggtgttggattctaacggcgcgtgatt-tttttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGCGTTCTGTACACCGACAAGGATGTGCAGGCTCGAAG
|| || ||    ||||| |   |   ||||    |||    |       ||| | ||         | | |    ||  || |   |  |    | | |||||  |  |  |||||||| ||||| ||||| ||||||||||||||||| | |||||| ||||||||||||||||||| ||||||||| ||||| ||||||||
gtacgtacgtacgcacgcg---attccaccgcctgcggcaggcaaaacccgtggcgcgatt-----ccgagtgacgaaatggtttctcgtttgtgtgtgtgatgatcctcgtcgcagATTGATGAGCTGGCTTCGTTCTCCGACTCGCCGGTGCCGTCGGTGACCCGCGTTCTGTACAGCGACAAGGACGTGCAAGCTCGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211310352|gb|FL001435.1|FL001435
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|71305489|gb|DR788882.1|DR788882
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|148941174|gb|EC886056.2|EC886056
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|30031746|gb|CB833597.1|CB833597
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|71775247|gb|DR973125.1|DR973125
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|211312367|gb|FL001438.1|FL001438
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|71434107|gb|DR815157.1|DR815157
EST:     GGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCCGTCCGTGACCCG
genomic: GGG-CCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCC-GTCCGTGACCCG
EST: gi|211310350|gb|FL001433.1|FL001433
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACC-GC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|78086441|gb|DV514834.1|DV514834
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|148969605|gb|EE020450.2|EE020450
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|211312372|gb|FL001443.1|FL001443
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|213178277|gb|FM185022.1|FM185022
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATTGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|211310349|gb|FL001432.1|FL001432
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|76015424|gb|DT942594.1|DT942594
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|32919442|gb|CF024254.1|CF024254
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATTGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|50323473|gb|CO518599.1|CO518599
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|91873539|gb|EB403496.1|EB403496
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|211312369|gb|FL001440.1|FL001440
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|86473059|gb|DY239429.1|DY239429
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAAGTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|50324880|gb|CO520006.1|CO520006
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|91874398|gb|EB404355.1|EB404355
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|211312370|gb|FL001441.1|FL001441
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|31361617|gb|CD445974.1|CD445974
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|211312371|gb|FL001442.1|FL001442
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|148983478|gb|EE029496.2|EE029496
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|71441173|gb|DR822223.1|DR822223
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|211312376|gb|FL001447.1|FL001447
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|211312373|gb|FL001444.1|FL001444
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|149103753|gb|EE289159.2|EE289159
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|71427278|gb|DR808328.1|DR808328
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|31356201|gb|CD440558.1|CD440558
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|76922692|gb|DV169124.1|DV169124
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|148940595|gb|EC885401.2|EC885401
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|211310353|gb|FL001436.1|FL001436
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|78107618|gb|DV526036.1|DV526036
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|149110741|gb|EE190584.2|EE190584
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|211312380|gb|FL001451.1|FL001451
EST:     AGGGCCCTTCCAGCGACTTCCATGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|148944452|gb|EC889567.2|EC889567
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
EST: gi|211312379|gb|FL001450.1|FL001450
EST:     AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAG                         ATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC
genomic: AGGGCCCTTCCAGCGACTTCCACGTCGACTCCGAGGGCCTCCAGCGTCAGgtgcgcactg ... tttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggctgtgcattgaggtgttggattctaacggcgcgtgatttttttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGCGTTCTGTACACCGACAAGGATGTGCAGGCTCGAAG
                         ttctaac  putative branch site (score: 1)
                                         tttttttttcgc  putative PPT
                                      tgattttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgcactggggcacgggcgcacggcacccttcgcgttgcggcgcggtcgtagtgcaggctatggctgtgcattgaggtgttggattctaacggcgcgtgatttttttttcgcagATCGATGAACTGGCCTCGTTCTCCGACTCGCCCGCGCCGTCCGTGACCCGCGTTCTGTACACCGACAAGGATGTGCAGGCTCGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG