1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaggtacgacgagcctgcctggatgtatacaaaccaagaagagcacggtactgagacttttgctcccgggtgtgtgcctctctgtttcgtcaatttccgccatgaaaatgcagGCAAGCTCTCGTTTACATGGTTTGGGCCGACCCCAAGAGTTCTAATCACCGATCCCGAGCTTGCCCGGGAAGTGCTGTCGAATAAGTGTGGCGACTTCGT
species | Zea mays |
transcript | GRMZM2G102318_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCCTCCCTCGCGTCGCGCCTTTCCTTCACCGCGTCCTCCAAGAGCACG GCAAGCTCTCGTTTACGTGGTTTGGGCCGACCCCAAGAGTTCTAATCACCGEST: gi|211534394|gb|FK980993.1|FK980993
genomic: CTTCCTCCCTCGCGTCGCGCCTTTCCTTCACCGCGTCCTCCAAGAGCACGgtaggtacga ... gaaaatgcagGCAAGCTCTCGTTTACATGGTTTGGGCCGACCCCAAGAGTTCTAATCACCG
EST: CTTCCTCCCTCGCGTCGCGCCTTTCCTTCACCGCGTCCTCCAAGAGCACG GCAAGCTCTCGTTTACATGGTTTGGGGCCGACCCCCAGAGTTCTAATCACCEST: gi|148972740|gb|EE023710.2|EE023710
genomic: CTTCCTCCCTCGCGTCGCGCCTTTCCTTCACCGCGTCCTCCAAGAGCACGgtaggtacga ... gaaaatgcagGCAAGCTCTCGTTTACATGGTTTGGG-CCGACCCCAAGAGTTCTAATCACC
EST: CTTCCTCCCTCGCGTCGCGCCTTTCCTTCACCGCGTCCTCCAAGAGCACG GCAAGCTCTCGTTTACATGGTTTGGGCCGACCCCAAGAGTTCTAATCACCGEST: gi|78104158|gb|DV522576.1|DV522576
genomic: CTTCCTCCCTCGCGTCGCGCCTTTCCTTCACCGCGTCCTCCAAGAGCACGgtaggtacga ... gaaaatgcagGCAAGCTCTCGTTTACATGGTTTGGGCCGACCCCAAGAGTTCTAATCACCG
EST: CTTCCTCCCTCGCGTCGCGCCTTTCCTTCACCGCGTCCTCCAAGAGCACG GCAAGCTCTCGTTTACATGGTTTGGGCCGACCCCAAGAGTTCTAATCACCGEST: gi|149074400|gb|EE162787.2|EE162787
genomic: CTTCCTCCCTCGCGTCGCGCCTTTCCTTCACCGCGTCCTCCAAGAGCACGgtaggtacga ... gaaaatgcagGCAAGCTCTCGTTTACATGGTTTGGGCCGACCCCAAGAGTTCTAATCACCG
EST: CTTCCTCCCTCGCGTCGCGCCTTTCCTTCACCGCGTCCTCCAAGAGCACG GCAAGCTCTCGTTTACATGGTTTGGGCCGACCCCAAGAGTTCTAATCACCGEST: gi|148962212|gb|EE013028.2|EE013028
genomic: CTTCCTCCCTCGCGTCGCGCCTTTCCTTCACCGCGTCCTCCAAGAGCACGgtaggtacga ... gaaaatgcagGCAAGCTCTCGTTTACATGGTTTGGGCCGACCCCAAGAGTTCTAATCACCG
EST: CTTCCTCCCTCGCGTCGCGCCTTTCCTTCACCGCGTCCTCCAAGAGCACG GCAAGCTCTCGTTTACATGGTTTGGGCCGACCCCAAGAGTTCTAATCACCGEST: gi|211534391|gb|FK980990.1|FK980990
genomic: CTTCCTCCCTCGCGTCGCGCCTTTCCTTCACCGCGTCCTCCAAGAGCACGgtaggtacga ... gaaaatgcagGCAAGCTCTCGTTTACATGGTTTGGGCCGACCCCAAGAGTTCTAATCACCG
EST: CTTCCTCCCTCGCGTCGCGCCTTTCCTTCACCGCGTCCTCCAAGAGCACG GCAAGCTCTCGTTTACATGGTTTGGGCCGACCCCAAGAGTTCTAATCACCGEST: gi|94480536|gb|EB709494.1|EB709494
genomic: CTTCCTCCCTCGCGTCGCGCCTTTCCTTCACCGCGTCCTCCAAGAGCACGgtaggtacga ... gaaaatgcagGCAAGCTCTCGTTTACATGGTTTGGGCCGACCCCAAGAGTTCTAATCACCG
EST: CTCCCCTCGCGTCCGCGCCCTTTCCTTCACCGCGTCCTCCCAAGAGCACG GCAAGCTCTCGTTTACATGGTTTGGGCCGACCCCAAGAGTTCTAATCACCG
genomic: CTCCC-TCGCGTC-GCGCC-TTTCCTTCACCGCGTCCTCC-AAGAGCACGgtaggtacga ... gaaaatgcagGCAAGCTCTCGTTTACATGGTTTGGGCCGACCCCAAGAGTTCTAATCACCG
tttgctcccgggtgtgtgcctctctgtttcgtcaatttccgccatgaaaatgcagGCAAGCTCTCGTTTACATGGTTTGGGCCGACCCCAAGAGTTCTAATCACCGATCCCGAGCTTGCCCGGGAAGTGCTGTCGAATAAGTGTGGCGACTTCGT
atgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtacgacgagcctgcctggatgtatacaaaccaagaagagcacggtactgagacttttgctcccgggtgtgtgcctctctgtttcgtcaatttccgccatgaaaatgcagGCAAGCTCTCGTTTACATGGTTTGGGCCGACCCCAAGAGTTCTAATCACCGATCCCGAGCTTGCCCGGGAAGTGCTGTCGAATAAGTGTGGCGACTTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT